Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0868
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    23   2.9  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   3.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.8  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -2

Query: 718 KPRPKTAPTSP---SRGCVEFFLPMITLLHLQIWKPFAVVGL 602
           KP+ KT PTSP   S       + +I  + L  W PF  V +
Sbjct: 252 KPQTKTKPTSPYHVSDHKAAITVGVIMGVFLICWVPFFCVNI 293


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +1

Query: 448 QDLVQAGYMGRKSGKGFYVYEKGSKNREVNHGAIKILKDKYALEPRG 588
           Q++    Y   KSGKGF ++ +  KN    +     L + Y L   G
Sbjct: 166 QNIAVIEYRIPKSGKGFSLFARFLKNPRPCNVLATSLTEPYTLRNYG 212


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 631 FVNEAVLSLEEKILHNPLKVMLVRSLVSASLH 726
           F  + +LSLE+K        +  R+  S+SLH
Sbjct: 16  FTTQQLLSLEKKFREKQYLTIAERAEFSSSLH 47


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 196 RPFLVVDLRPQRLPMYRRWC 137
           +  ++V +RP+RLP +   C
Sbjct: 812 KALMIVGIRPERLPSFDDEC 831


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 196 RPFLVVDLRPQRLPMYRRWC 137
           +  ++V +RP+RLP +   C
Sbjct: 850 KALMIVGIRPERLPSFDDEC 869


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -3

Query: 507  IHIETFAGLASHVSSLH*VLHDTQ---VSSANAIT 412
            I + T AGL +   S H VLH  Q    SSA+ +T
Sbjct: 923  IQVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVT 957


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 161 PLWP*VYDKERSSSRWGMGLVFTPHVSFL 247
           PL P +YDK R+    G   +   HV+ L
Sbjct: 11  PLNPKLYDKHRAPKFLGQPTIVYFHVTVL 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,428
Number of Sequences: 438
Number of extensions: 5051
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)