Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0866
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    27   2.0  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    27   2.6  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   3.5  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    27   3.5  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    27   3.5  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    26   4.6  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    26   6.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   6.0  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   8.0  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    25   8.0  

>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
 Frame = +2

Query: 356 VENIPCVQKKEHKIM-YRVSVTDLEPKSIKNLVKRKETESEMIEIYQRYMKQK*VKVIQ 529
           +ENI  V++++ K   +R     L+ +  ++ +KRK +ES++ +   +  + K  ++IQ
Sbjct: 605 IENIQVVKRRQEKEKSFRQKAKQLKQQEDEDNLKRKRSESDVEDNEAKEKQAKVARIIQ 663


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 359 ENIPCVQKKEHKIMYRVSV-TDLEPKSIKNLVKRKETESEMIE 484
           E +PCV+  +  I   VSV  D+   S       KET SE++E
Sbjct: 687 ERLPCVESSDKSIKASVSVLPDIYEDSDAMSKASKETRSEVLE 729


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +1

Query: 490 PEVYETEMSESNPTAH*DKI*TTRSMGTINNRLFEGNKTIYNRYQG 627
           PE  E +MS  +          +R M  +++ L  GN T YN Y G
Sbjct: 446 PEELERKMSHGDEAVSSSS--ASRFMSKVSSNLNSGNPTPYNSYNG 489


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +2

Query: 416 TDLEPKSIKNLVKRKETESEMIEIYQRYMKQK*VKVIQPHTETRSKQLEAWEQLITDYLK 595
           T+ + K+ K+      TE   +E+ ++YM+ + +  I  + +  S + E   Q++  +  
Sbjct: 377 TESQSKTTKHSTSLPSTEP--VEVDKQYMESEKIPTIDEYLQEYSNEDEIVLQVLESFPA 434

Query: 596 ATKQSTI--DIREASNTPLFNNIEINRKLSQ 682
           A   STI   I+   +     N  I R L++
Sbjct: 435 AVSFSTITNTIQAKYSNRKIKNSNITRSLNR 465


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 284 PVHRALIAAVARDCSIMISFSP-NYVENIPCVQKKEHKIMYRVSV 415
           P H AL+A+V+ DC++ I  +  N  E  P V +   K +  V++
Sbjct: 245 PQHEALLASVSDDCTLQIHDTRLNPEEEAPKVIQAHSKAINAVAI 289


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
 Frame = +2

Query: 65  QKRNECVDDSILTSNTFL--YKLLE-----LQKLGDSVNFDVTNYLKHED 193
           +K+N   D  +L +N++L  + LL+     L+KLG +  F+++ Y  H D
Sbjct: 519 EKKNPNTDQLLLQANSYLAQWDLLKDERNMLKKLGSNDYFNISMYSNHTD 568


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 259 FVFGFTEIQISSIFYYHRDISSIFMFQIICYVKI 158
           +++ +  I  SSIF Y   I S F+F ++ Y  +
Sbjct: 469 YIYSYKLIPHSSIFVYTVPIISTFLFPMVTYAAL 502


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 290 HRALIAAVARDCSIMISFSPNYVENIPCVQKKEHKIM 400
           H+ ++ A  RD +  I  SP+YV+  PCV     KI+
Sbjct: 92  HKFVVIASERDLARKILNSPSYVQ--PCVVDAGKKIL 126


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 251 KDKEHFFKNLEPVHRAL 301
           K  EHFFKN+ P+H  L
Sbjct: 589 KKVEHFFKNILPLHFGL 605


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 658 YVIEKRCV*CLPDIYCRLFCC 596
           Y +++    CL D+YC + CC
Sbjct: 148 YGMKENIYTCLKDLYCSVSCC 168


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 493 EVYETEMSESNPTAH 537
           E+YET++ ES PT H
Sbjct: 405 ELYETDLKESAPTQH 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,725
Number of Sequences: 5004
Number of extensions: 56519
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)