Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0866
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    28   0.099
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    27   0.23 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   0.92 
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    22   4.9  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   6.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.5  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 0.099
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
 Frame = +2

Query: 383 KEHKIMYRVSVTDLEPKSIKNLVKRKETESEMIEIYQRYMKQK*VKVIQPHTETRSKQLE 562
           KE ++ YR     ++ +  +   K K       E+Y +Y      K++   ++T+SK  E
Sbjct: 32  KEERLQYRREAWLVQQEREQEYEKLKRKMILEYELYIKYSHTHEKKLVLERSKTKSKSPE 91

Query: 563 AWEQLITDYLKATKQSTIDIREASNTPLF---NNIEINRKLSQEAILTI 700
           + ++  T     T   +  +  + +T LF     I+IN    Q+  L I
Sbjct: 92  SRDRSNTSNTSKTFILSDKLESSDDTSLFRGPKGIQINATELQKIKLEI 140


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -1

Query: 319 SCHGSYQCPMYRLQIFKEVLFVFGFTEIQISSIFYYHRDISSI 191
           SC   Y      ++IF   +F F +    I  I+YY + +S +
Sbjct: 196 SCSFDYLTDTNEIRIFVATIFTFSYCIPMILIIYYYSQIVSHV 238


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 670 SINFYVIEKRCV*CLPDIYCRLFCCLQ 590
           SI+FYV    C+  L  IYCRL+C  Q
Sbjct: 198 SISFYV---PCIVML-GIYCRLYCYAQ 220


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +2

Query: 14  SDLDLKETKASVKYFKIQKRNECVDDSILTSNTFLYKLLELQKLGDSVNFDV 169
           S+L + ++KAS ++   +K+N+  +D   T      +L    K G +++ D+
Sbjct: 196 SELWVYKSKASEEHGNKKKKNKEDEDDGATPRKAPPQLSTTDKKGSAIDLDI 247


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = +2

Query: 260 EHFFKNLEPVHRALIAAVARDCSIMISFS 346
           +H+F++L+P+ +        +  I+++FS
Sbjct: 35  DHYFRDLQPLFKLACTDTFMEGVIVLAFS 63


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 272 KNLEPVHRALIAAVARDCSIMISFSPNYVENIP 370
           ++L P H    + VAR+ +  +S +   V ++P
Sbjct: 673 EHLSPDHNGNYSCVARNLAAEVSHTQRLVVHVP 705


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,096
Number of Sequences: 438
Number of extensions: 3742
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)