Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0865
(736 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0158 - 15298902-15299111,15300557-15300655,15301375-153014... 95 5e-20
01_06_0255 - 27918447-27918534,27918615-27918685,27919131-279192... 89 4e-18
03_01_0367 + 2852287-2852603,2853202-2853278,2853388-2853431,285... 88 8e-18
02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891... 35 0.077
12_01_0377 - 2939384-2939505,2939629-2939695,2940324-2940543,294... 32 0.54
04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69... 32 0.54
04_03_0888 - 20559435-20559565,20559674-20559740,20560217-205604... 30 1.7
06_01_0978 + 7595641-7595843,7595952-7596072,7596176-7596253,759... 30 2.2
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 29 3.8
02_05_0690 - 30943184-30943305,30944048-30944459,30944549-309446... 29 5.1
02_04_0199 - 20861793-20862023,20862588-20862798,20863260-208641... 28 8.8
>10_08_0158 -
15298902-15299111,15300557-15300655,15301375-15301443,
15301535-15301681,15301762-15301839,15302221-15302264,
15302521-15302603,15303394-15303620
Length = 318
Score = 95.1 bits (226), Expect = 5e-20
Identities = 56/136 (41%), Positives = 75/136 (55%), Gaps = 7/136 (5%)
Frame = +2
Query: 50 SYNEVADELVLEFAAGIHG-------SGDGQQYDQKNIRRRVYDALNVLMAMNIISKDKK 208
+YNEVADELV EFA + + + Q+D+KNIRRRVYDALNVLMAM+IISKDKK
Sbjct: 115 TYNEVADELVAEFADPNNNFASPDPDNPNTPQFDEKNIRRRVYDALNVLMAMDIISKDKK 174
Query: 209 EIRWLGLPTNSVQECNAXXXXXXXXXXXXXXXXXXXXXXXXXHISFKSLIERNKEAENKG 388
EI+W GLP S+ + + ++L +RN++ G
Sbjct: 175 EIQWKGLPRTSMSDVEELKTEIIGLKGRIDKKNAYLQELEDQFVGLQNLAQRNEQLYGSG 234
Query: 389 LKPSPSSAIHLPFIVV 436
+PS + LPFI+V
Sbjct: 235 --NAPSGGVALPFILV 248
>01_06_0255 -
27918447-27918534,27918615-27918685,27919131-27919226,
27919335-27919403,27919489-27919629,27919708-27919761,
27920183-27920236,27920343-27920386,27921012-27921117,
27921197-27921258,27921358-27921679
Length = 368
Score = 88.6 bits (210), Expect = 4e-18
Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 2/164 (1%)
Frame = +2
Query: 62 VADELVLEFAAGIHGSGDGQQYDQKNIRRRVYDALNVLMAMNIISKDKKEIRWLGLPTNS 241
VADE+ E + +G ++D+KNIRRRVYDA NVL+A+ +I+KDKKEI+W+GL
Sbjct: 197 VADEIFAELKSITQ---NGLEFDEKNIRRRVYDAFNVLIAIRVIAKDKKEIKWMGLTNYR 253
Query: 242 VQECNAXXXXXXXXXXXXXXXXXXXXXXXXXHISFKSLIERNKEAENKGLKPSPS-SAIH 418
++ +++ RN+ ++ +P+ S + I
Sbjct: 254 YEKIQKLEEVHKELITRIKNKKKLLQEIEKQFDDLQNITLRNQASQ----RPAESVNGIL 309
Query: 419 LPFIVVNTSDKALIDCSISNDKTEYMFNFD-KRFQIHDDIDILK 547
LPF+++ TS KA ++ IS D F+F+ F +HDD+ IL+
Sbjct: 310 LPFLLIKTSRKARVEIEISEDSKFARFDFNGAPFTMHDDVSILE 353
>03_01_0367 +
2852287-2852603,2853202-2853278,2853388-2853431,
2854294-2854440,2854528-2854596,2854770-2854868,
2855155-2855193
Length = 263
Score = 87.8 bits (208), Expect = 8e-18
Identities = 47/106 (44%), Positives = 58/106 (54%)
Frame = +2
Query: 119 QQYDQKNIRRRVYDALNVLMAMNIISKDKKEIRWLGLPTNSVQECNAXXXXXXXXXXXXX 298
QQYD+KNIRRRVYDALNVLMAM IISKDKKEI+W GLP S+ +
Sbjct: 147 QQYDEKNIRRRVYDALNVLMAMEIISKDKKEIQWKGLPRTSINDIEDLQTELVGLKSRIE 206
Query: 299 XXXXXXXXXXXXHISFKSLIERNKEAENKGLKPSPSSAIHLPFIVV 436
+ + LI+RN++ G PS + LPFI+V
Sbjct: 207 KKNTYLQELQDQFVGMQKLIQRNEQLYGSG--NIPSGGVALPFILV 250
>02_04_0115 -
19888252-19888406,19888507-19888573,19888867-19889101,
19889179-19889255,19889350-19889415,19889517-19889565,
19889651-19889701,19889799-19889851,19889973-19890024,
19890126-19890214,19890308-19890393,19890603-19890659,
19890742-19890919,19891852-19891908,19892209-19892439
Length = 500
Score = 34.7 bits (76), Expect = 0.077
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 143 RRRVYDALNVLMAMNIISKD-KKEIRWLGLPTNSVQ 247
+RR+YD NVL + +I K K IRW GL + V+
Sbjct: 206 KRRIYDITNVLEGIGLIEKTLKNRIRWKGLDDSGVE 241
>12_01_0377 -
2939384-2939505,2939629-2939695,2940324-2940543,
2940655-2940731,2940813-2940878,2940970-2941018,
2941131-2941181,2941262-2941314,2941432-2941486,
2941563-2941651,2941742-2941827,2941933-2941989,
2942086-2942275,2943847-2944005
Length = 446
Score = 31.9 bits (69), Expect = 0.54
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 143 RRRVYDALNVLMAMNIISKD-KKEIRWLGL 229
+RR+YD NVL + +I K K IRW G+
Sbjct: 167 KRRIYDITNVLEGIGLIEKKLKNNIRWKGI 196
>04_01_0069 -
697811-697876,697956-698166,698265-698359,698448-698513,
698595-698643,698720-698770,698856-698908,699263-699331,
699874-699928,700011-700099,700217-700302,700376-700432,
700575-700716,701637-702032
Length = 494
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 143 RRRVYDALNVLMAMNIISKD-KKEIRWLGLPTNSVQE 250
+RR+YD NVL +++I K K IRW G + +E
Sbjct: 230 KRRIYDITNVLEGVDLIEKTLKNMIRWKGFDMSKPKE 266
>04_03_0888 -
20559435-20559565,20559674-20559740,20560217-20560477,
20560783-20560848,20560971-20561019,20561441-20561491,
20561568-20561620,20561743-20561794,20561867-20561955,
20562044-20562135,20562298-20562351,20563411-20563462,
20563775-20563963
Length = 401
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 143 RRRVYDALNVLMAMNIISKD-KKEIRWLG 226
+RR+YD NVL +I K K IRW G
Sbjct: 132 KRRIYDITNVLEGTGLIEKKLKNRIRWRG 160
>06_01_0978 +
7595641-7595843,7595952-7596072,7596176-7596253,
7596371-7596436,7596556-7596688,7596774-7596841,
7596930-7597002,7597097-7597158,7597240-7597633,
7597768-7597832
Length = 420
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Frame = +2
Query: 116 GQQYDQKNIR---RRVYDALNVLMAMNIISKD------KKEIRWLG 226
G+ + N+R RR+YD NVL ++N+I K K RWLG
Sbjct: 238 GEGHAANNMRTKVRRLYDIANVLSSLNLIEKTQQADSRKPAFRWLG 283
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 143 RRRVYDALNVLMAMN-IISKDKKEIRWLG 226
RRR+YD +NVL ++ ++ + K W+G
Sbjct: 94 RRRIYDIVNVLESIGMLVRRAKNRYTWIG 122
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 29.1 bits (62), Expect = 3.8
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +2
Query: 350 SLIERNKEAENKGLKPSPSSAIHLPFIVVNTSDKALIDCSISN-DKTEYMFNFDKRFQIH 526
+L +R+KEA KG + S HLP T D+ +I+ +EY D R
Sbjct: 79 ALDDRDKEA--KGRRASVRLVYHLPA----TGDELHFTRAITGAGGSEY--RIDGRLVTW 130
Query: 527 DDIDI-LKRMGLLFGLDKGECSEEDIERAKSMVPKSLESYVEQMA 658
DD + L+ +G+L + D+E S PK L + +EQ++
Sbjct: 131 DDYNAKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQIS 175
>02_05_0690 -
30943184-30943305,30944048-30944459,30944549-30944610,
30944724-30944787,30944880-30944947,30945039-30945168,
30945276-30945341,30945794-30946369
Length = 499
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Frame = +2
Query: 116 GQQYDQKNIRRRVYDALNVLMAMNIISK------DKKEIRWLG 226
G+ + + RR+YD NVL ++N I K K RWLG
Sbjct: 295 GEGHAENTKVRRLYDIANVLSSLNFIDKIQQADSRKPAFRWLG 337
>02_04_0199 -
20861793-20862023,20862588-20862798,20863260-20864142,
20864363-20865608
Length = 856
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +2
Query: 407 SAIHLPFIVVNTSDKALIDCSISNDKTEYMFNFDKRFQIHDDID 538
SA+H+ F+V D+ + + N T ++ +R I D+D
Sbjct: 310 SAVHVKFLVYEYMDRGSLSRYLENHNTAIELDWMRRINIVKDVD 353
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,241,873
Number of Sequences: 37544
Number of extensions: 258337
Number of successful extensions: 592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -