Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0865
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    26   0.42 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.9  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   9.1  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   9.1  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   9.1  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   9.1  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   9.1  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 341 SFKSLIERNKEAENKGLKPSPSSAIHLPFIVVNTSDKALIDCSIS 475
           +FK ++   K A  +G +PS S       +VV   + ++I+C+IS
Sbjct: 335 AFKRIL--TKGARARGNQPSTSECGEFRSVVVQKRNGSMIECNIS 377


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -1

Query: 61  FVV*CETFCL 32
           F V CETFCL
Sbjct: 662 FAVACETFCL 671


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 KKKSNKNWNRYRRKHNSCK 320
           +KKS KN N YR+   + K
Sbjct: 46  EKKSYKNENSYRKYRETSK 64


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 KKKSNKNWNRYRRKHNSCK 320
           +KKS KN N YR+   + K
Sbjct: 46  EKKSYKNENSYRKYRETSK 64


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 KKKSNKNWNRYRRKHNSCK 320
           +KKS KN N YR+   + K
Sbjct: 46  EKKSYKNENSYRKYRETSK 64


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 KKKSNKNWNRYRRKHNSCK 320
           +KKS KN N YR+   + K
Sbjct: 46  EKKSYKNENSYRKYRETSK 64


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 KKKSNKNWNRYRRKHNSCK 320
           +KKS KN N YR+   + K
Sbjct: 279 EKKSYKNENSYRKYRETSK 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,906
Number of Sequences: 438
Number of extensions: 3077
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)