Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0864
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.79 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   3.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +2

Query: 374 DSFSNVKQWLEEIDRYACDNVNKLLVGNKCDLTTKKVVDF-STAKQYAEQLGIPF---LE 541
           +++  VK+W + +D YA +N    +V     L T+      +T K Y     +PF     
Sbjct: 270 ETYELVKEWRDFVDNYAEENKRDEIV-----LLTEAYSSLENTLKYYEVGSNVPFNFKFI 324

Query: 542 TSAKNSTNVEQ 574
           T A +S+  EQ
Sbjct: 325 TDANSSSTPEQ 335


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -2

Query: 341 HVLLCSMMR*WF*TAPVQLCPIFVTLLSCH 252
           H ++   M        +Q+CPI++   S H
Sbjct: 111 HAIIACQMEFQLYPMDIQICPIYIESFSYH 140


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 200 SRCKYHQRILATDMISQLQSHQSGV 126
           S C+    I +TD+I   Q H  GV
Sbjct: 520 SACRPRHEIRSTDVIPGTQEHVCGV 544


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 532  VPRDVSEELYE 564
            VPRDVSE +Y+
Sbjct: 1265 VPRDVSEGIYD 1275


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -1

Query: 600 ISAAIVMNACSTFVEFFADVSRN 532
           ++  IV  ACS   + F +V+RN
Sbjct: 410 LAVGIVGGACSDVEQNFYEVARN 432


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,452
Number of Sequences: 438
Number of extensions: 2731
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)