Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0863
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 32 0.062
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 31 0.19
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 27 2.3
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.3
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 3.1
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom... 26 4.1
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 26 5.4
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.4
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.4
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy... 25 7.1
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 25 9.4
SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 9.4
SPAC977.02 |||S. pombe specific 5Tm protein family|Schizosacchar... 25 9.4
SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 9.4
SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 9.4
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 32.3 bits (70), Expect = 0.062
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -3
Query: 461 QTHDKPCTDYKNKILKLTKFLPPNTDNTAYYGNKATT*HLKQFVY*RIPLRFNKDNKK 288
Q HD P + +L K+L + + AY N+ + HL Q V+ + L +N+DN K
Sbjct: 2 QLHDPPAPLSQPSASRLQKYLLESAEKHAYDSNEESKTHLLQEVFLSL-LNYNEDNWK 58
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 30.7 bits (66), Expect = 0.19
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = -1
Query: 340 NNLYINEFHYDSTKTTKKNVRNVFIISLTFV-YTRGQCLYGTFDFHETIETRVDGTAAAI 164
++L + FH STK +KN +V LT + ++G +YG F + T ++ G A A
Sbjct: 1493 DDLGVASFHGTSTKANEKNECDVIDSQLTHLGRSKGNAVYGVFQKYLTGHSK--GGAGAW 1550
Query: 163 FVT*FLHILTS 131
+ L IL S
Sbjct: 1551 MLNGALQILRS 1561
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 638 FIHVRTQLPCTIHI--KLI*INTFLRYLSYNEFTIQPKKTNSICFSF*KY 495
++H+R+ +PC +H+ L + Y+ Y+E + K+ +I S Y
Sbjct: 1049 YVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSVDPY 1098
>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 140
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Frame = +2
Query: 290 FCCLC*IVMEFVNIQIVLNVMLSLCFRN------KLYYQCLAVKILLILIFCFCNPYMVY 451
+C L F+ + L +++ +C + + YY L+ KILL L+ C + Y
Sbjct: 76 WCFLTLATWSFMKLLKTLRIVIYICTSDHWTHSLRFYYIELS-KILLYLLICGVSLYGAI 134
Query: 452 RVFVTL 469
R+F+ L
Sbjct: 135 RIFINL 140
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +2
Query: 269 ENVTYVFFCCLC*IVMEFVNIQIVLNVM 352
E V++V FCC+C + +V+I+ L ++
Sbjct: 1445 EKVSFVSFCCVCLAGIPYVSIEEPLMII 1472
>SPBC18H10.09 |||zinc finger protein, zf-CHY
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 489 ENHCQSNNVTNTR*TMYGLQK 427
+NHCQ N T T+ T+ G ++
Sbjct: 89 QNHCQKQNTTQTKTTISGSEQ 109
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -1
Query: 559 PTMNLLFSQKKQILYVSAFKSTV 491
PT+NLLFSQ K I A ++TV
Sbjct: 27 PTLNLLFSQSKPIPKPVAKETTV 49
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -3
Query: 461 QTHDKPCTDYKNKILKLTKFLPPNTDNTAYY 369
+TH+ DYK K L+ T T NTAYY
Sbjct: 285 ETHEDTILDYKAKYLRKT------TGNTAYY 309
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 25.8 bits (54), Expect = 5.4
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = +1
Query: 397 GKNFVNFNILFL*SVH----GLSCVCYIIALTMILILYF 501
GK+F + FL S+ GLS I LT+I++LYF
Sbjct: 35 GKSFEKYETSFLKSLFNGNLGLSLPSAINILTLIIVLYF 73
>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 559
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +2
Query: 314 MEFVNIQIVLNVMLSLCFRNKLYYQCLAVKILLILIFCFCNP 439
+E+ +++ +LN L + ++ L ++++LL +FC +P
Sbjct: 85 VEYADVEAILNRALIIAEQHNLTEYKFSLQLLLSRVFCRTSP 126
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 7/31 (22%)
Frame = +3
Query: 480 NDSHTVLLKAETY-------RICFFWLNSKF 551
ND TVLL+A Y ++CFF L K+
Sbjct: 102 NDGQTVLLRARVYTSRLQGNKMCFFSLRQKY 132
>SPBPB2B2.17c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +2
Query: 389 CLAVKILLILIFCF 430
CLAVK+L+ L++C+
Sbjct: 43 CLAVKLLIYLLYCW 56
>SPAC977.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +2
Query: 389 CLAVKILLILIFCF 430
CLAVK+L+ L++C+
Sbjct: 43 CLAVKLLIYLLYCW 56
>SPBC1348.03 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +2
Query: 389 CLAVKILLILIFCF 430
CLAVK+L+ L++C+
Sbjct: 43 CLAVKLLIYLLYCW 56
>SPAC750.04c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/14 (57%), Positives = 13/14 (92%)
Frame = +2
Query: 389 CLAVKILLILIFCF 430
CLAVK+L+ L++C+
Sbjct: 43 CLAVKLLIYLLYCW 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,716,466
Number of Sequences: 5004
Number of extensions: 58072
Number of successful extensions: 144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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