Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0863
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    26   0.36 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    26   0.36 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    26   0.36 

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 43   ISMLILIFIVKFDFRQVTGMFAASKY 120
            + +L++I ++ F FR+  G +A SKY
Sbjct: 1005 VLVLLVIIVLAFVFRESVGAWAYSKY 1030


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 360 SDNMTFKTICILTNSITIQQRQQKKTYVTFSLSVLH 253
           SD   F  IC+LTN+  +   + +     FSLSV H
Sbjct: 515 SDGSYFGEICLLTNARRVASVRAETYCNLFSLSVDH 550


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 360 SDNMTFKTICILTNSITIQQRQQKKTYVTFSLSVLH 253
           SD   F  IC+LTN+  +   + +     FSLSV H
Sbjct: 483 SDGSYFGEICLLTNARRVASVRAETYCNLFSLSVDH 518


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,778
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)