Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0862
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   1.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   2.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.5  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.1  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +2

Query: 632 VNRSGKLSVGCHII 673
           +++ GKLS GCHI+
Sbjct: 314 MHQRGKLSAGCHIL 327


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 600 STVYKKKIFYLLYRHYCFFFKRY 532
           ST  +   FY+LY++   +F RY
Sbjct: 412 STSMRDPAFYMLYQNILSYFLRY 434


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 600 STVYKKKIFYLLYRHYCFFFKRY 532
           ST  +   FY+LY+    +F RY
Sbjct: 412 STSMRDPAFYMLYQKILSYFLRY 434


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 608 VLRNAFLFVNRSGKLSVGC 664
           V +N  LFV   G  +VGC
Sbjct: 309 VSKNGVLFVGLVGNSAVGC 327


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,732
Number of Sequences: 438
Number of extensions: 3147
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)