Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0861
         (638 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.62 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.8  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   5.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.6  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -1

Query: 242 PPTSHTVKLMFLYSTVSTLKPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPK 69
           PPTS TV L+  Y   + +   + +VVTI+     +R  V    ++    + I  LP+
Sbjct: 290 PPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPR 347


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 144 EFVQNCGFTSCIQTNHQYSHFLFAKTAFK*IRKH 43
           EF++N         N + S+F  A T+ + IR H
Sbjct: 88  EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 121


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 144 EFVQNCGFTSCIQTNHQYSHFLFAKTAFK*IRKH 43
           EF++N         N + S+F  A T+ + IR H
Sbjct: 88  EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 121


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -3

Query: 144 EFVQNCGFTSCIQTNHQYSHFLFAKTAFK*IRKH 43
           EF++N         N + S+F  A T+ + IR H
Sbjct: 27  EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRIH 60


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 232 DVGGQDKIRPLWRH 273
           DV   DK+ PL+ H
Sbjct: 267 DVSSNDKVHPLYGH 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,797
Number of Sequences: 438
Number of extensions: 4225
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)