Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0860
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    28   1.2  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   3.6  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   4.8  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   4.8  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   6.3  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    26   6.3  

>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 631 DLVKNLGRFCFTDIXPNAHITIGKPLPPTI 720
           DLV  +   CF D+   +H++I   LP  +
Sbjct: 78  DLVNKIASLCFEDVIDTSHVSIKLTLPKCV 107


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 123 LQRPPSSTKIAKMSGDDIRSEPDGGAYYNDYRKKDYKIPLTSS 251
           L+ P     ++  S  D+ S+P+  +Y    ++K   + LTSS
Sbjct: 194 LKLPALDHAVSSSSSSDLPSDPNSASYIASSKQKASSLKLTSS 236


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 261 LGRANKGVTACSPGSATGVTSSLTQHRLRPEVVTTSHRVQE 383
           LG+ N GV   +    TGVT +L + RL  E  T +  + E
Sbjct: 326 LGKGNYGVVYKALHQPTGVTMALKEIRLSLEEATFNQIIME 366


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 172 SSPLILAIFVLDGGLWRLMYPLDTG 98
           +SP I  I  +DGGL RLM  L  G
Sbjct: 49  TSPKIREILTMDGGLMRLMNILRAG 73


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 87  YERRPVSNGYMSLQRPPSSTKIAKMS 164
           Y   P+ NG++ LQ  PSS   AK +
Sbjct: 646 YVLSPILNGFLKLQDNPSSIYFAKQT 671


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 322 DVTPVAEPGLHAVTPLLALPRLWYELVKGIL*SF 221
           +V P +   L  + P+ +LPR W  L   +L SF
Sbjct: 305 EVLPTSTKRLTVLEPITSLPRKWDPLYLDVLSSF 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,574
Number of Sequences: 5004
Number of extensions: 56202
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)