Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0860
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0864 - 28852252-28854582                                         29   2.8  
03_05_0298 - 22873933-22874040,22874807-22875407,22875517-228755...    28   6.6  
02_05_1203 - 34934635-34934749,34934865-34934923,34935019-349351...    28   8.7  

>04_04_0864 - 28852252-28854582
          Length = 776

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +3

Query: 132 PPSST---KIAKMSGDDIRSEPDGGAYYNDYRKKDYKIPLTS 248
           PPSST   K+ K  G D+  EP+   + +  +K  YK+ +T+
Sbjct: 702 PPSSTYHVKVTKFKGADVIVEPNTLHFVSTNQKLSYKVTVTT 743


>03_05_0298 -
           22873933-22874040,22874807-22875407,22875517-22875596,
           22875685-22875816
          Length = 306

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 655 TFQDFLPNQICSMTVTACLLKCISL 581
           T ++ +PNQI S  V  C+ +C+S+
Sbjct: 56  TQEEIVPNQISSSRVRECIRRCLSI 80


>02_05_1203 -
           34934635-34934749,34934865-34934923,34935019-34935120,
           34935254-34935333,34935474-34935558,34935641-34935724,
           34935842-34935927,34936053-34936135,34936226-34936479
          Length = 315

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 646 DFLPNQICSMTVTACLLKCISL 581
           + +PNQI S  V  C+ KC+S+
Sbjct: 266 EIVPNQISSSRVRECIKKCLSI 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,264,486
Number of Sequences: 37544
Number of extensions: 375539
Number of successful extensions: 1028
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)