Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0860
(726 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ426166-1|CAD19856.1| 84|Homo sapiens immunoglobulin kappa li... 34 0.45
AJ426248-1|CAD19938.1| 94|Homo sapiens immunoglobulin kappa li... 32 1.8
AK097353-1|BAC05011.1| 236|Homo sapiens protein ( Homo sapiens ... 31 3.2
DQ323010-1|ABC67132.1| 120|Homo sapiens immunoglobulin light ch... 31 5.6
AB095290-1|BAC80172.1| 108|Homo sapiens immunoglobulin kappa li... 31 5.6
AB063953-1|BAC01581.1| 107|Homo sapiens immunoglobulin kappa li... 31 5.6
AY490879-1|AAR89606.1| 91|Homo sapiens immunoglobulin light ch... 30 7.3
AY320885-1|AAQ22171.1| 89|Homo sapiens immunoglobulin kappa ch... 30 7.3
X00965-1|CAA25477.1| 130|Homo sapiens immunoglobulin kappa ligh... 30 9.7
U09074-1|AAA21409.1| 95|Homo sapiens immunoglobulin kappa chai... 30 9.7
DQ323009-1|ABC67131.1| 120|Homo sapiens immunoglobulin light ch... 30 9.7
>AJ426166-1|CAD19856.1| 84|Homo sapiens immunoglobulin kappa light
chain variable region protein.
Length = 84
Score = 34.3 bits (75), Expect = 0.45
Identities = 21/56 (37%), Positives = 28/56 (50%)
Frame = +3
Query: 198 AYYNDYRKKDYKIPLTSSYHSLGRANKGVTACSPGSATGVTSSLTQHRLRPEVVTT 365
+Y N YR+K K+P Y S GV + GS +G +LT L+PE V T
Sbjct: 17 SYLNWYRQKPGKVPKLLIY-SASNLQSGVPSRFSGSGSGTDFTLTISSLQPEDVAT 71
>AJ426248-1|CAD19938.1| 94|Homo sapiens immunoglobulin kappa light
chain variable region protein.
Length = 94
Score = 32.3 bits (70), Expect = 1.8
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = +3
Query: 198 AYYNDYRKKDYKIPLTSSYHSLGRANKGVTACSPGSATGVTSSLTQHRLRPEVVTTSHRV 377
+Y N Y++K K P Y + GV + GS +G +LT RL+PE T +
Sbjct: 21 SYLNWYQQKPGKAPKLLIY-AASTLQSGVPSRFSGSGSGTDFTLTISRLQPEDFATYYCQ 79
Query: 378 QESCI*CT 401
Q CT
Sbjct: 80 QSYSTPCT 87
>AK097353-1|BAC05011.1| 236|Homo sapiens protein ( Homo sapiens
cDNA FLJ40034 fis, clone SYNOV2000152, highly similar to
Homo sapiens kappa 1 immunoglobulin light chain mRNA. ).
Length = 236
Score = 31.5 bits (68), Expect = 3.2
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Frame = +3
Query: 102 VSNGYMSLQRPPSSTKIAKMSGDDI----RSEPDGGAYYNDYRKKDYKIPLTSSYHSLGR 269
+S Q S T ++ GD + ++ D ++ N Y+ K K P H R
Sbjct: 17 LSGARCDTQMTQSPTSLSASVGDRVTITCQASHDIESFLNWYQYKPGKAP-KRLIHDGSR 75
Query: 270 ANKGVTACSPGSATGVTSSLTQHRLRPEVVTT 365
+ KGV GS G SL + L+PE V T
Sbjct: 76 SEKGVPRRFSGSGFGTDFSLFINNLQPEDVAT 107
>DQ323010-1|ABC67132.1| 120|Homo sapiens immunoglobulin light chain
variable region YV3-4-K1-L9 protein.
Length = 120
Score = 30.7 bits (66), Expect = 5.6
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +3
Query: 126 QRPPS-STKIAKMSGDDIRSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRANKGVTACSPG 302
Q P S ST + R+ +Y N Y++K K P Y + + GV + G
Sbjct: 8 QSPSSLSTSVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYVA-SNLHSGVPSRFSG 66
Query: 303 SATGVTSSLTQHRLRPEVVTT 365
S +G SLT + L+PE T
Sbjct: 67 SGSGTDFSLTINILQPEDFAT 87
>AB095290-1|BAC80172.1| 108|Homo sapiens immunoglobulin kappa light
chain protein.
Length = 108
Score = 30.7 bits (66), Expect = 5.6
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +3
Query: 120 SLQRPPSSTKIAKMSGDDI----RSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRANKGVT 287
++Q S + ++ GD + R+ Y N Y++K K P Y S GV
Sbjct: 1 AIQLTQSPSSLSASVGDRVTITCRASQSVTTYLNWYQQKPGKAPKLLIY-SASSLQSGVP 59
Query: 288 ACSPGSATGVTSSLTQHRLRPEVVTT 365
+ GS +G SLT L+PE T
Sbjct: 60 SRFSGSGSGTDFSLTISSLQPEDFAT 85
>AB063953-1|BAC01581.1| 107|Homo sapiens immunoglobulin kappa light
chain VLJ region protein.
Length = 107
Score = 30.7 bits (66), Expect = 5.6
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +3
Query: 180 SEPDGGAYYNDYRKKDYKIPLTSSYHSLGRANKGVTACSPGSATGVTSSLTQHRLRPE 353
S+ Y Y++K + P Y + RA GV+A GS +G SLT +RL PE
Sbjct: 26 SQSFSSRYLAWYQQKPGQAPRLLIYGASTRAT-GVSARFSGSGSGTDFSLTINRLEPE 82
>AY490879-1|AAR89606.1| 91|Homo sapiens immunoglobulin light chain
variable region protein.
Length = 91
Score = 30.3 bits (65), Expect = 7.3
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +3
Query: 177 RSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRANKGVTACSPGSATGVTSSLTQHRLRPEV 356
R+ +Y N Y++K K P Y + GV + GS +G +LT L+PE
Sbjct: 15 RASQSISSYLNWYQQKPGKAPKLLIY-AASSLQSGVPSRFSGSGSGTDFTLTISSLQPED 73
Query: 357 VTTSHRVQESCI*CT 401
T + Q CT
Sbjct: 74 FATYYCQQSYSTPCT 88
>AY320885-1|AAQ22171.1| 89|Homo sapiens immunoglobulin kappa chain
variable region protein.
Length = 89
Score = 30.3 bits (65), Expect = 7.3
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +3
Query: 177 RSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRANKGVTACSPGSATGVTSSLTQHRLRPEV 356
++ D Y N Y++K K P Y + GV + GS +G + T L+PE
Sbjct: 15 QASQDISNYLNWYQQKPGKAPKLLIYDA-SNLETGVPSRFSGSGSGTDFTFTISSLQPED 73
Query: 357 VTTSHRVQESCI*CT 401
+ T + Q + CT
Sbjct: 74 IATYYCQQYDNLPCT 88
>X00965-1|CAA25477.1| 130|Homo sapiens immunoglobulin kappa light
chain (VJ) protein.
Length = 130
Score = 29.9 bits (64), Expect = 9.7
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +3
Query: 123 LQRPPSSTKIAKMSGDDI----RSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRANKGVTA 290
+Q S + ++ GD + R+ Y N Y++K K P Y + GVT+
Sbjct: 24 IQMTQSPSSLSASVGDRVTITCRASQSISNYLNWYQQKPGKAPKLLIY-AASSLQSGVTS 82
Query: 291 CSPGSATGVTSSLTQHRLRPE 353
GS +G +LT L+PE
Sbjct: 83 RFSGSGSGTDFTLTISSLQPE 103
>U09074-1|AAA21409.1| 95|Homo sapiens immunoglobulin kappa chain,
V-region (SPK.13) protein.
Length = 95
Score = 29.9 bits (64), Expect = 9.7
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = +3
Query: 126 QRPPS-STKIAKMSGDDIRSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRANKGVTACSPG 302
Q PPS S + R+ G++ Y++K K P Y S GV++ G
Sbjct: 6 QSPPSLSASVGDRVTITCRASQAIGSHLMWYQQKPGKAPELLIY-SASTLQHGVSSRFSG 64
Query: 303 SATGVTSSLTQHRLRPEVVTTSHRVQESCI 392
S +G SLT L+PE T + Q+S I
Sbjct: 65 SGSGTEFSLTISSLQPEDFAT-YYCQQSFI 93
>DQ323009-1|ABC67131.1| 120|Homo sapiens immunoglobulin light chain
variable region YV3-4-K1-L8 protein.
Length = 120
Score = 29.9 bits (64), Expect = 9.7
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Frame = +3
Query: 117 MSLQRPPSSTKIAKMSGDDI----RSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRANKGV 284
+ ++ S + ++ GD + R+ +Y N Y++K K P Y + + GV
Sbjct: 2 LDIEMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKLLIYVA-SNLHSGV 60
Query: 285 TACSPGSATGVTSSLTQHRLRPEVVTT 365
+ GS +G SLT + L+PE T
Sbjct: 61 PSRFSGSGSGTDFSLTINILQPEDFAT 87
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,432,784
Number of Sequences: 237096
Number of extensions: 2035321
Number of successful extensions: 4099
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4099
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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