Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0860
         (726 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    31   0.84 
Z37092-10|CAA85459.1|  280|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical ...    29   4.5  
AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical ...    29   4.5  
U58756-9|AAC48086.1|  667|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U53334-1|AAA96168.1|  508|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne...    28   7.8  

>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +3

Query: 138 SSTKIAKMSGDDIRSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRAN 275
           +  K+ KM+ D +     GGA++  YRK++    +T  Y SL  AN
Sbjct: 237 AGVKVGKMNKDGVILGATGGAFFTSYRKREGN--MTKLYTSLVPAN 280


>Z37092-10|CAA85459.1|  280|Caenorhabditis elegans Hypothetical
           protein F44F4.10 protein.
          Length = 280

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
 Frame = +3

Query: 81  CLYERRPVSNGYMSLQRPPSSTK-IAKMSGDDIRS----EPDGGAYYNDYRKKDYKIPLT 245
           C   ++P  + Y++L  P S  + +A+   D +R     E  G    +  RKK    P+ 
Sbjct: 71  CSNGKKPADDEYVNLLLPQSKEEQVAEKLADKLRKLEVKESKGKRRGSKERKKKKPEPVE 130

Query: 246 SSYHSLGRANKGVTACSPGSATGVTSSLTQH 338
           S+Y SL           P +   + S++  H
Sbjct: 131 STYESLASIEGSTNFSGPVTTESLESNVKCH 161


>Z81082-6|CAB03098.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +3

Query: 93  RRPVSNGYMSLQRPPSSTKIAKMSGDDIRS----EPDGGAYYNDYRKKDYKIPLTSSYHS 260
           ++PV N Y++L       K+A      +R     EP      +  RKK    P+ S+Y S
Sbjct: 75  KKPVDNEYVNLPVLSEEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYES 134

Query: 261 LGRANKGVTACSPGSATGVTSSLTQH 338
           L           P +   + S++  H
Sbjct: 135 LATIEGSTNYSGPVTTESLESNVKFH 160


>Z70752-3|CAA94755.3|  654|Caenorhabditis elegans Hypothetical
           protein F25B3.3 protein.
          Length = 654

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 126 QRPPSSTKIAKMSGDDIRSEPDGGAYYNDYRKKDYKIPLTS 248
           ++P  STK++     DIR + +   YYN     D +I L S
Sbjct: 591 EKPTCSTKLSPPKLKDIRPQSESTEYYNSGSTPDEEIGLVS 631


>AL034543-5|CAA22519.1|  279|Caenorhabditis elegans Hypothetical
           protein F42G4.6 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +3

Query: 93  RRPVSNGYMSLQRPPSSTKIAKMSGDDIRS----EPDGGAYYNDYRKKDYKIPLTSSYHS 260
           ++PV N Y++L       K+A      +R     EP      +  RKK    P+ S+Y S
Sbjct: 75  KKPVDNEYVNLPVLSEEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYES 134

Query: 261 LGRANKGVTACSPGSATGVTSSLTQH 338
           L           P +   + S++  H
Sbjct: 135 LATIEGSTNYSGPVTTESLESNVKFH 160


>AL034543-1|CAA22516.1|  243|Caenorhabditis elegans Hypothetical
           protein Y81G3A.1 protein.
          Length = 243

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
 Frame = +3

Query: 93  RRPVSNGYMSLQRPPSSTKIAKMSGDDIRS----EPDGGAYYNDYRKKDYKIPLTSSYHS 260
           ++PV N Y++L       K+A      +R     EP      +  RKK    P+ S+Y S
Sbjct: 75  KKPVDNEYVNLPVLSEEQKLADKLAAKLRKLEVKEPKSKKRGSKERKKKKSEPVESTYES 134

Query: 261 LGRANKGVTACSPGSATGVTSSLTQH 338
           L           P +   + S++  H
Sbjct: 135 LATIEGSTNYSGPVTTESLESNVKFH 160


>U58756-9|AAC48086.1|  667|Caenorhabditis elegans Hypothetical
           protein F58F9.7 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
 Frame = +3

Query: 102 VSNGYMSLQ--RPPSSTKIAKMSGDDIRSEPDGGAYYNDYRKKDYKIPLTSSYHSLGRAN 275
           V NG+M  +  R P S  + K  G DI   PDG  Y   ++    K  ++    S+GR  
Sbjct: 236 VENGWMEFKNHRAPLSALLNK--GCDIT--PDG-KYVTSFKSASEKQSVSLGTLSVGRLG 290

Query: 276 ---KGVTACSPGSATGVTSSLTQHRLRP 350
              KG+ AC+  S   +  S+ + +  P
Sbjct: 291 IIAKGMMACTFASTIAIRYSVARRQFGP 318


>Z81077-17|CAB82212.1| 2944|Caenorhabditis elegans Hypothetical
            protein F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 243  TSSYHSLGRANKGVTACSPGSATGVTSSLTQHRLRPEVVTTSHRVQES 386
            T SY +      G TA +P SAT   ++     + P   TTS   QES
Sbjct: 1905 TLSYAAGSTTGTGSTAPAPASATAGNNNSQVRSVPPPTTTTSSSNQES 1952


>Z75952-7|CAB82204.1| 2944|Caenorhabditis elegans Hypothetical protein
            F36A2.13 protein.
          Length = 2944

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +3

Query: 243  TSSYHSLGRANKGVTACSPGSATGVTSSLTQHRLRPEVVTTSHRVQES 386
            T SY +      G TA +P SAT   ++     + P   TTS   QES
Sbjct: 1905 TLSYAAGSTTGTGSTAPAPASATAGNNNSQVRSVPPPTTTTSSSNQES 1952


>U53334-1|AAA96168.1|  508|Caenorhabditis elegans Hypothetical
           protein R105.1 protein.
          Length = 508

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = -1

Query: 270 LSLDCGTS*LKVFCNPFSYNXXXXXXXXXXXXXXXRSSWRSLYW 139
           LSLD G + L  FCNP   N                  WRS+ W
Sbjct: 340 LSLDHGVTELIFFCNPPDGNTLSIDNKIVIYNDSPYGYWRSIQW 383


>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
           neurexin-like protein 1 protein.
          Length = 1655

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 400 VHYIQLSCTRCEVVTTSGRSRCCVSDDVTPVAEPGLHAVTPL 275
           V  I+L+    +  TT+ R R C ++D+T    P L +  PL
Sbjct: 401 VDIIELAVLTNDSRTTASRVRSCNNEDLTEFQGPSLFSADPL 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,207,736
Number of Sequences: 27780
Number of extensions: 324957
Number of successful extensions: 849
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)