Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0855
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    31   0.12 
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   2.5  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    27   3.4  
SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.4  
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.4  
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce...    26   5.9  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.8  

>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +2

Query: 185 DFPQNLTCRWKIGSVIVLQHSISSISAFIHKYT---FGVDELNIEHCKKNVDSIFSVSWA 355
           D    L CRW    ++ L  S +SI+++I+      + +D LN+E      DS+   +W 
Sbjct: 632 DLVLTLLCRWL--HMVHLYSSRTSITSWIYSIASKFYFIDSLNLE----TKDSVLESNWE 685

Query: 356 LIVLRDYIWELDNLR 400
             +     +ELD++R
Sbjct: 686 RFISSTETYELDSIR 700


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +2

Query: 191 PQNLTCRWKIGSVIVLQHSIS-SISAFIHKY 280
           PQ  TCR+ + S +VL+H+ S SI+ F+  +
Sbjct: 201 PQCPTCRFGLPSPVVLEHAKSHSITTFLRDF 231


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -1

Query: 443 FFNSLMYKSKKKTLILDCPVPKYNLSKQLGPTKQKRWNRHFFYSVQYS 300
           F+ SL+  S K  L +      Y  SK+LGPT+    + +   SV YS
Sbjct: 192 FYTSLLSWSPKGDLAIGLAENIYLWSKELGPTRVLEESIYDVSSVAYS 239


>SPBC577.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 213 GKLVQSLFSNTVFLPSVLLYINIHLVWMN 299
           G +   LFS+T F  S++  + ++  W+N
Sbjct: 204 GSMFSGLFSDTTFTKSLVRQVKLYNEWLN 232


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 364 FERLYLGTGQSKINVFFFDLYINELKKKLHTPLW 465
           +  L +GTG S +++  FDL  N L  +    LW
Sbjct: 198 YHTLSVGTGLSYVSLIIFDLPSNLLMTRADPRLW 231


>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = +2

Query: 209 RWKIGSVIVLQHSISSISAFIHKYTFG 289
           RW + ++++++  I ++  F+ K TFG
Sbjct: 213 RWPLWTIVIIECFILTLDVFLIKETFG 239


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 58   ITFEGNISEN*SNELIWNEYVLVLKYILE 144
            +TFEG  S+N  N+L +N+Y+  +  I E
Sbjct: 2237 VTFEGRFSQNEQNDL-FNKYLSFIADIYE 2264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,758
Number of Sequences: 5004
Number of extensions: 55672
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)