Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0855
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301...    36   0.030
01_01_1050 + 8283589-8283782,8284551-8284814,8284897-8284912,828...    30   2.0  
01_06_1584 - 38441654-38442847                                         29   4.6  
09_01_0154 + 2298432-2299415                                           28   6.0  

>08_02_1512 +
           27627740-27629009,27629111-27629256,27629842-27630101,
           27630346-27630412,27630511-27630545,27630818-27631587,
           27631633-27631793
          Length = 902

 Score = 35.9 bits (79), Expect = 0.030
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -3

Query: 414 KKNINLRLSSSQI*SLKTIRAHETEKMESTFFLQCSIFSSSTPNVYLCIKALMEEILCW 238
           +K+  L++SS  I  L ++   E  + E    ++C   SS+   +Y+  K L+EE+ CW
Sbjct: 417 QKSSGLKVSSMMICGLSSV-GEEFLQFEEDKAMECGNLSSTLQKLYMWEKKLLEEVKCW 474


>01_01_1050 +
           8283589-8283782,8284551-8284814,8284897-8284912,
           8285032-8285389,8285860-8286050,8286108-8286197,
           8287399-8287596
          Length = 436

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 227 VIVLQHSISSISAFIHKYTFGVDELNIEHCKKNVDSIFSVSWALIVL 367
           ++ LQ  I    +F  + T  +D    +H  +  DS+F++ WAL VL
Sbjct: 365 IVSLQQQIVGPFSFRVESTVTIDPKKQDHFVRVDDSVFAIDWALKVL 411


>01_06_1584 - 38441654-38442847
          Length = 397

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -1

Query: 497 VKQKIYGSIFVQRGVCSFFFNSLMYKSKKKTLILDCPVPKYNLSKQLGPTKQKRWN 330
           +K+K++ SI +Q+GVC  +  S +  ++         +   +L K+   T  +RWN
Sbjct: 79  LKRKLFSSILLQKGVCDAYILSNLGFAEPSIFFAFAFLLHGSLQKRELGTLNQRWN 134


>09_01_0154 + 2298432-2299415
          Length = 327

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 192 HKT*LVGGKLVQSLFSNTVFLPSVLLYINIHLV 290
           H T  VGG  + S+  + +FL +++LYI++  V
Sbjct: 174 HMTAFVGGSSMASILGSLLFLAALVLYIHLGAV 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,469
Number of Sequences: 37544
Number of extensions: 284335
Number of successful extensions: 564
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)