Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0854
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   2.5  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   5.7  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   5.7  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   7.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    25   10.0 

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 372 ILKKISNILYYIFNNDLFNASFYQTPYYN 458
           IL+   N+L Y   N + N    QTPYYN
Sbjct: 810 ILRGEVNLLNYSLENVVLNIFKKQTPYYN 838


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 41  LLSTLEEAYIYLKKKRFY-KVKYFCLKRKFQV 133
           ++ T++  +IY  K  +Y K+KY C  + + +
Sbjct: 525 IVKTIQAIFIYFDKDMYYKKLKYACTPKSWNI 556


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/33 (24%), Positives = 19/33 (57%)
 Frame = +1

Query: 217 CFTFVFVITLCFDYPSVLILEMYILHVIIFLIN 315
           C+ F+   +LC   P  L+  +Y+  +++F ++
Sbjct: 634 CYDFMIGASLCSHQPKFLLSLVYLTDLVLFFLD 666


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 611 LYTTSLSLDKDALGWAFACPPVLV 540
           L+T SL L  DA+  AF C  +LV
Sbjct: 369 LWTNSLGLISDAIHMAFDCIAILV 392


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +2

Query: 5   LYDLKKSQLEKGLLSTLEEAYIYLKKKRFYKVKYFCLKRK 124
           L D+K+  L++ ++S LEE  +  K+ + Y++K + + R+
Sbjct: 397 LMDIKQKMLQQKIVSYLEEKKL-AKRVKNYRLKDWLISRQ 435


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,650
Number of Sequences: 5004
Number of extensions: 43437
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)