Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0854
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.5  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   6.1  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 481 HHCFFFFLRDYWLLRGLSRFTRTGGQAKA 567
           H CFF  LRD +  +G  R + TG   +A
Sbjct: 391 HVCFFSLLRDAFTSKGEYRMS-TGEMKEA 418


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 261 FCINIRNVYFTRNYI 305
           +C N R +Y+  NYI
Sbjct: 100 YCNNYRKLYYNINYI 114


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +1

Query: 397 YTTFSTMIYLTPLFIKLHTII*TNRFLQHHCFFFFL 504
           YTT  T+ Y T  F  +  +    R L +H F  ++
Sbjct: 187 YTTDCTIEYSTGNFTCIQIVFNLRRRLGYHLFHTYI 222


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,682
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)