Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0853
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    29   0.39 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.8  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   3.7  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   8.5  

>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 29.5 bits (63), Expect = 0.39
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 255 LQHFKIELITIKNRFQIYSTGLIRNMTAFRDNINTEYKVCSDL 127
           + H K+E +T K   +++S  L  N +     IN EYKV   L
Sbjct: 181 ISHEKLENLTPKQLKEVFSQFLFNNQSKSSLKINLEYKVIKHL 223


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -2

Query: 318  ISKNVGGSD*TDIFIQHPR-NLLQHFKIELITIKNRFQIYSTGLIRNMTAFRDNINTEYK 142
            + K +GGS   ++   +P   +    KI  +  K R+ I +T L +N+T F D I ++  
Sbjct: 1991 LCKIMGGSVSVEVSQNNPTFKICYDLKIHELG-KERYDIIATPLFQNLTEFNDLIKSKVA 2049

Query: 141  V 139
            +
Sbjct: 2050 I 2050


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 415 FCLTKPLSFINLKSNFD*LIFCHPINRIFIIHYLKKCR 302
           FC  K LS+  +K N+D +      N +F++    K R
Sbjct: 287 FCEQKDLSYTTVKDNWDNITVAPSTNVLFLLSVPSKVR 324


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 92  VFYYLNLRKANLRSEHTLYSVLILSRKAVMFLI 190
           +F  LNLR A++ + HTL    +L      FL+
Sbjct: 423 LFRMLNLRIASMGNNHTLLEKCLLITNHATFLV 455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,380,416
Number of Sequences: 5004
Number of extensions: 46264
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)