Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0848
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...   178   6e-46
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    27   2.1  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    27   3.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   4.8  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    26   6.4  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   6.4  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.4  

>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score =  178 bits (434), Expect = 6e-46
 Identities = 89/174 (51%), Positives = 130/174 (74%), Gaps = 2/174 (1%)
 Frame = +2

Query: 20  HGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGD-FNQVVLQNVT 196
           H LLK+K++AL+ RFR I+  I + K  MG VM+ AAFS+AE  F  G+  N  + Q+V 
Sbjct: 30  HSLLKRKSEALKKRFREIVVNIEQAKQKMGRVMQIAAFSMAEVGFAMGNNINFEIQQSVK 89

Query: 197 KAQIKIRSKKDNVAGVTLPIFESYQDGS-DTYELAGLARGGQQLAKLKKNFQSAVKLLVE 373
           + ++++RSK++N++GV LP FE   D S D ++L GL +GGQQ+ K ++ ++ AV+ LV+
Sbjct: 90  QPRLRVRSKQENISGVFLPTFEMNLDESIDDFQLTGLGKGGQQIQKARQVYEKAVETLVQ 149

Query: 374 LASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFYR 535
           LAS Q++FV L +V+++TNRRVN+IEH+IIPRLE T+ YI SEL+ELERE+F R
Sbjct: 150 LASYQSAFVLLGDVLQMTNRRVNSIEHIIIPRLENTIKYIESELEELEREDFTR 203


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -1

Query: 370 DQKLYSALEVLLQLCKLLPTTGQTSQLVGIRTILV*LKDWEG 245
           DQ   + LE L++LC L  TT ++   +    I + LKD++G
Sbjct: 378 DQPNLTLLEYLIRLCALESTTQESVLQLPDEQIALYLKDYQG 419


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +1

Query: 304 GPWWA-AACKAEEELPERCKAFGRVSFTADFI 396
           G WW   +C  EEE+    KAFG    T + I
Sbjct: 304 GTWWLDVSCPKEEEIRVLAKAFGIHPLTVEDI 335


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 133  ESSFFHHFTHKGFSLNDFAQDHTEPHL 53
            + SF+ HF H GF +  +     + HL
Sbjct: 1516 KKSFYKHFLHSGFPVESYLHKVLDNHL 1542


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 374 LASLQTSFVTLDEVIKITNRRVNAIEHVII 463
           + SL       D+V+KI  +R   ++H++I
Sbjct: 81  MTSLNLFVTKFDQVLKILEKRAPTVDHILI 110


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 691 VLRLDLEQQVLIALVQQVGDPTAQVVAGSQESGFF 587
           V+ LD EQQ ++       +PT+  +  SQ + FF
Sbjct: 88  VIVLDSEQQTVLLQSNFTSNPTSLEIFSSQNTSFF 122


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 287  YELAGLARGGQQLAKLKKNFQSAVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIP 466
            + L  L    Q   +LKK     ++L  EL   Q S   ++  +  TN  + A+E+++  
Sbjct: 811  FNLRPLLSSTQNDKQLKKRDAEIIELKYELKKQQNSKSEVERDLVETNNSLTAVENLL-- 868

Query: 467  RLERTLA 487
              ER +A
Sbjct: 869  TTERAIA 875


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,360
Number of Sequences: 5004
Number of extensions: 47537
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)