Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0848
(733 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1340 + 32766773-32767582 192 3e-49
07_03_1198 + 24734985-24735169,24737897-24737975,24738070-247381... 34 0.13
02_05_0862 - 32305562-32305654,32305935-32306033,32306178-323062... 29 3.8
10_02_0144 + 5815403-5815520,5815551-5816314 29 5.0
03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300... 29 5.0
02_05_0430 - 28923784-28923830,28923931-28924341,28924552-289249... 29 5.0
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 28 6.6
04_04_1012 - 30104401-30104955,30105066-30106841 28 8.8
04_04_1005 - 30043698-30044252,30044363-30046138 28 8.8
03_01_0631 + 4642817-4643347 28 8.8
>04_04_1340 + 32766773-32767582
Length = 269
Score = 192 bits (467), Expect = 3e-49
Identities = 101/181 (55%), Positives = 130/181 (71%), Gaps = 9/181 (4%)
Frame = +2
Query: 20 HGLLKKKADALQVRFRMILSKIIETKTLMGEVMKEAAFSLAEAKFTTGD-FNQVVLQNVT 196
H LLKKK+DAL V+FR IL KI+ K MGE M+ ++FSLAEAK+ GD VVLQ+V
Sbjct: 31 HALLKKKSDALTVQFRAILKKIVAAKESMGEAMRASSFSLAEAKYVAGDGVRHVVLQSVR 90
Query: 197 KAQIKIRSKKDNVAGVTLPIFESYQD--------GSDTYELAGLARGGQQLAKLKKNFQS 352
A +++RS ++NVAGV LP F + D + + L GLARGGQQ+A +
Sbjct: 91 SASLRVRSHQENVAGVKLPKFTHFVDPAAGSAGPSNASPSLTGLARGGQQVAACRAAHVK 150
Query: 353 AVKLLVELASLQTSFVTLDEVIKITNRRVNAIEHVIIPRLERTLAYIISELDELEREEFY 532
A+++LVELASLQTSF+TLDE IK TNRRVNA+E+V+ PRLE T++YI ELDELERE+F+
Sbjct: 151 AIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPRLENTISYIKGELDELEREDFF 210
Query: 533 R 535
R
Sbjct: 211 R 211
>07_03_1198 +
24734985-24735169,24737897-24737975,24738070-24738134,
24738214-24738313,24738429-24738470,24739062-24739100,
24739140-24739330,24739745-24739850
Length = 268
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Frame = +2
Query: 20 HGLLKKKADALQVRFRMILSKIIETKTL--MGEVMKEAAFSLAEAKFTTGDFNQVVLQNV 193
+G+LK K DALQ R +L + ++T T+ + ++ + +SL K NQ++ +++
Sbjct: 95 YGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSL---KHIRSKKNQLLFESI 151
Query: 194 TKAQIKIRSKKD 229
++ Q K +S K+
Sbjct: 152 SELQKKEKSLKN 163
>02_05_0862 -
32305562-32305654,32305935-32306033,32306178-32306259,
32307407-32307764,32308745-32309521,32309612-32309716,
32309803-32309911,32311016-32311024
Length = 543
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +1
Query: 451 ARNHSPAGTYTRVHHLRAGRA*A*GVLPSQEDPGQEEDYQGQGRSEKSRSPG 606
A + PA + RVH + G + G P E+ +EE+++G G + G
Sbjct: 11 ATDPDPAPSPLRVHGIGIGSHASRGTAPRGEEEEEEEEWRGDGDAGSEEEEG 62
>10_02_0144 + 5815403-5815520,5815551-5816314
Length = 293
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Frame = -3
Query: 719 CGLQTGYVWSAT-----SGLRTASPHR-PRPASW*PHRASRCRQPGERL 591
CG QTG+V+S + G R +PHR R + P R R R GE L
Sbjct: 68 CGAQTGHVFSRSIEVVRRGGRVLAPHRLRRSPALGPKRQKRRRGKGESL 116
>03_05_0803 +
27829438-27829461,27829558-27829643,27829960-27830088,
27830806-27830925,27831007-27831132,27831349-27831433,
27831538-27831648,27832215-27832308,27832448-27832728,
27832840-27832947,27833163-27833284,27833825-27834035,
27834149-27834376,27834591-27834680
Length = 604
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 523 GVLPSQEDP-GQEEDYQGQGRSEKSRSPGCRQRLARWGHQL 642
G +P +P G ED +G+ E S++ RLA+ HQL
Sbjct: 270 GRVPGNSEPAGLIEDKEGEDNKESSKTDESELRLAQLQHQL 310
>02_05_0430 -
28923784-28923830,28923931-28924341,28924552-28924963,
28925000-28925542,28925790-28925884,28926003-28927033,
28927304-28927452,28927483-28927523,28927594-28928206
Length = 1113
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +2
Query: 140 AEAKF-TTGDFNQVVLQNVTKAQIKIRSKKD 229
AE+KF G N ++QN+T+ ++ ++ KKD
Sbjct: 25 AESKFGEEGVTNDAIMQNLTQTELLVKEKKD 55
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +2
Query: 119 KEAAFSLAEAKFTTGDFNQVVLQNVTKAQIKIRSKKDNVAGVTLPIFESYQDGSDTYE 292
K+A S + TTGD N +L+ ++ +D GVT+ E + +E
Sbjct: 205 KDAEASASAPPLTTGDGNSDILEETPSTSSELPDNQDYETGVTMSFDEQLKAFGSCHE 262
>04_04_1012 - 30104401-30104955,30105066-30106841
Length = 776
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 484 RVHHLRAGRA*A*GVLPSQEDPGQEEDYQGQGRSEKSRSPGCRQRLARWGHQLAGRG 654
R R GRA G L + D E+D+ G E+ GC R R GRG
Sbjct: 311 RADRPRRGRAVRGGHLHDEGDHDDEDDWDG----ERDDRDGCADRDGRHARDQGGRG 363
>04_04_1005 - 30043698-30044252,30044363-30046138
Length = 776
Score = 27.9 bits (59), Expect = 8.8
Identities = 19/57 (33%), Positives = 23/57 (40%)
Frame = +1
Query: 484 RVHHLRAGRA*A*GVLPSQEDPGQEEDYQGQGRSEKSRSPGCRQRLARWGHQLAGRG 654
R R GRA G L + D E+D+ G E+ GC R R GRG
Sbjct: 311 RADRPRRGRAVRGGHLHDEGDHDDEDDWDG----ERDDRDGCADRDGRHARDQGGRG 363
>03_01_0631 + 4642817-4643347
Length = 176
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +1
Query: 538 QEDPGQEEDYQGQGRSEKSRSPGCRQRLARWGHQLAG 648
QE+PG+E +G+ + K + G ++++ R+ +L G
Sbjct: 108 QEEPGREASGKGKQQEVKRKKSGKKKKIGRFLSRLVG 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,903,376
Number of Sequences: 37544
Number of extensions: 344641
Number of successful extensions: 965
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -