Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0848
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 698 VWSATSGLRTAS--PHRPRPASW*PHRAS 618
           V+ +T+G    S  PH+  P+ + PHR S
Sbjct: 304 VYPSTAGFLPPSYHPHQHHPSQYHPHRGS 332


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 216 GPRRTMLLVSPSQSLSHTRMVLIPTSWLVWPVVGSSL 326
           GP R +    P++ L H     IP  WLV+P    SL
Sbjct: 16  GPPRLLGWNVPAEELIH-----IPEHWLVYPEPNPSL 47


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 707 TGYVWSATSGLRTASPHRPRPASW*P 630
           T Y  +   G+R A+P    P +W P
Sbjct: 497 TLYKIARREGIRLAAPFNASPTTWSP 522


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 283 YLRVGWFGPW 312
           Y RV W GPW
Sbjct: 55  YERVEWSGPW 64


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -1

Query: 118 HHFTHKGFSLNDFAQDHTEPHLKGI 44
           HH THKG  +      HT   L G+
Sbjct: 572 HHLTHKGKPIRMRIGIHTGMVLAGV 596


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/21 (38%), Positives = 9/21 (42%)
 Frame = +1

Query: 178 CPTKCYQGSNQD*VQEGQCCW 240
           C   C  G  +  V   QCCW
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCW 607


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,759
Number of Sequences: 438
Number of extensions: 3096
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)