Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0847
(611 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 30 0.30
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 3.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 3.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 3.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 3.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 3.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 3.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 3.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 3.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 3.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 3.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 3.7
SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase Cka1|Sch... 26 4.9
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 25 6.5
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 25 6.5
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 25 6.5
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 25 8.6
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 29.9 bits (64), Expect = 0.30
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +2
Query: 260 EVYGSLDNVVIITLAPELPGCFEAIKDLTNLGIKVALGHSIASLAEGEKAVECGANLITH 439
E GS+D V I + + F ++D+T V G + L + E+A++ G N++
Sbjct: 342 EEMGSVDVVETIEIGGDRVTVFRQVEDITRTATIVLRGATKTYLDDLERAIDDGVNIVKA 401
Query: 440 L 442
L
Sbjct: 402 L 402
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.2 bits (55), Expect = 3.7
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
Frame = +2
Query: 68 PTMITSDQEIYRQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESY----IKNP 235
PT S IY + P + K ++ G+ ++ F+ KK +H + + +
Sbjct: 290 PTRPWSKSVIYGGVYPNKINRKTIKLNISLNGISIKTEFLV-VKKFSHPAAISFTTLYDN 348
Query: 236 HRGIDTIREVYGSLDNVVIITLAPELPGCFEAIKDLT 346
+ I + + ++ V I PELP ++ KD+T
Sbjct: 349 NIEISSSKHTLSQMNKVSNIVKEPELPDIYKEFKDIT 385
>SPAC23C11.11 |cka1|orb5|serine/threonine protein kinase
Cka1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 179 PFISPTKKGAHVESYIKNPHRGIDTIREVYGSLDNVVII 295
P +S ++ AHV + + + ++EV+G DN II
Sbjct: 8 PVVSVSRVYAHVNEEMPREYWDYENMQEVFGYQDNYEII 46
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 25.4 bits (53), Expect = 6.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 302 APELPGCFEAIKDLTNLGIKVALGHSIASLAEGE 403
AP+ PG FE+I +T+ L IA+ AEG+
Sbjct: 135 APQKPGYFESISQITS---SPRLNTLIANTAEGQ 165
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 351 RFVRSLIASKQPGSSGASVIITTLSKEPYTSLIVSIPL 238
+FV+ + +K+ A ++TTLS P TS + S L
Sbjct: 472 KFVQKVTITKEGKKRVAPQLLTTLSATPSTSRLASTQL 509
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +1
Query: 28 LQRIC*LME*QHLSYDDYIRSRN 96
++R+C +E H Y+D+IR++N
Sbjct: 31 VERLCFQIEQAHWFYEDFIRAQN 53
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.0 bits (52), Expect = 8.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = +2
Query: 104 QILPRIKKTQGNKNGATVLGVHLEG----PFISPTKKGAHVESYIKN 232
Q+ P +K G G + G HL P SP++K +V+S +++
Sbjct: 179 QLTPLQRKLMGLPEGGSTSGKHLTPPRYRPNFSPSRKAENVKSPVRS 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,604
Number of Sequences: 5004
Number of extensions: 50555
Number of successful extensions: 136
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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