Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0847
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0354 + 16697571-16700256,16700335-16700759                       29   3.8  
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779...    29   3.8  
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833     29   3.8  
05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001     28   6.7  
01_04_0072 - 15721866-15723563                                         28   6.7  
01_04_0070 - 15704794-15706491                                         28   6.7  
05_04_0100 + 18001824-18001831,18001953-18002151                       27   8.9  

>11_04_0354 + 16697571-16700256,16700335-16700759
          Length = 1036

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +2

Query: 326  EAIKDLTNLGIKVALGHSIASLAEGEKAVECG-----ANLITHLFNAMLPFHHRDPGLVG 490
            + I   +++GI+  +G+      EG +   CG       +I  LF  M+P H  D    G
Sbjct: 876  QPINSKSSIGIRGTIGYVAPEYGEGGQVSPCGDAYSFGIVILELFTGMVPTH--DMFRDG 933

Query: 491  LLASTMKKQVYYGII 535
            L      K V+ GI+
Sbjct: 934  LTLQKHVKNVFPGIL 948


>02_04_0364 +
           22374735-22374749,22374903-22375076,22377858-22377935,
           22379270-22380407,22380507-22380901,22382230-22382416,
           22382872-22382942,22383705-22383755
          Length = 702

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 2/104 (1%)
 Frame = +2

Query: 101 RQILPRIKKTQGNKNGATVLGVHLEGPFISPTKKGAHVESYIKNPHRGIDTIREVYGSLD 280
           R  L    K   NKN ++    HL+G   S +K  A     ++N    ++T+      L 
Sbjct: 144 RNNLRSCNKINSNKNSSSSSRKHLQGRVSSKSKNTAKESGAVEN----LETLYRCDSDLG 199

Query: 281 NVVIITLAPEL--PGCFEAIKDLTNLGIKVALGHSIASLAEGEK 406
           + +  T  PEL   GC + I+      IK    +S  SL E  K
Sbjct: 200 SFMARTKNPELYRNGCTQRIR-----AIKQRSPNSDTSLVENSK 238


>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
          Length = 503

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 137 NKNGATVLGVHLEGPFISPTKKGAHVES 220
           N NG  V G+ +  P +SP   G HVE+
Sbjct: 269 NCNGVRVDGLSISSPALSPNTDGIHVEN 296


>05_07_0301 + 29087014-29088349,29088507-29088645,29090350-29091001
          Length = 708

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 140 KNGATVLGVHLEGPFISPTKKGAHVESYIKNPHRGIDTIREVYGSLDNVVII 295
           + GATV+   L+    S  +  AH++S  K  HR +  +R  Y S D  +++
Sbjct: 380 EEGATVVVKRLKEVAASRREFSAHLDSLGKVDHRNLLPVRGYYFSKDEKLLV 431


>01_04_0072 - 15721866-15723563
          Length = 565

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 598 TFGISSVCYSERCWMSVDTISYYTIIYLFF 509
           +F     CY+   W++V  +++ T+  +FF
Sbjct: 85  SFNNHGECYTSNWWLTVSLVTFLTVFCIFF 114



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 598 TFGISSVCYSERCWMSVDTISYYTIIYLFF 509
           +F     CY+   W++V  +++ T+  +FF
Sbjct: 335 SFNNHGECYTSNWWLTVSLVTFLTVFCIFF 364


>01_04_0070 - 15704794-15706491
          Length = 565

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 598 TFGISSVCYSERCWMSVDTISYYTIIYLFF 509
           +F     CY+   W++V  +++ T+  +FF
Sbjct: 85  SFNNHGECYTSNWWLTVSLVTFLTVFCIFF 114



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -2

Query: 598 TFGISSVCYSERCWMSVDTISYYTIIYLFF 509
           +F     CY+   W++V  +++ T+  +FF
Sbjct: 335 SFNNHGECYTSNWWLTVSLVTFLTVFCIFF 364


>05_04_0100 + 18001824-18001831,18001953-18002151
          Length = 68

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 388 TGNGMSKSNFDTKIREILDCFKTTWKFW 305
           T NG S S  + + +++LDC +    FW
Sbjct: 33  TSNGASNSQKNVEDKDLLDCLENGVNFW 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,339
Number of Sequences: 37544
Number of extensions: 294447
Number of successful extensions: 751
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)