Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0847
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    23   2.4  
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   3.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.1  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    22   5.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.5  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.5  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   9.5  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   9.5  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 293 ITLAPELPGCFEAIKDLTNLGIKVALGHSIASLAEGEKAVECGANLITHL 442
           + LA  +  C E+   +    + + L   I SLA   K +E     +TH+
Sbjct: 69  VVLAKTIAECPESENTVQKAALVLRLREGIGSLARILKTIENFKGTVTHV 118


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 160 KYCSTIFVSLGFL 122
           KYC  ++VSLG L
Sbjct: 20  KYCEKVYVSLGAL 32


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 116 RIKKTQGNKNGATVLGVHLEGPFISPTK 199
           RI+ T+  KNG  VLG  +E   +SP +
Sbjct: 333 RIQLTE--KNGIDVLGNIMEASILSPNQ 358


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 374 HSIASLAEGEKAVECGANLITHLFNAMLP 460
           HSI  +    +   CG N+I H F  + P
Sbjct: 15  HSIIQIPVIIQLPFCGPNVIDHYFRDLQP 43


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 204 PFLVGLINGPSKCTPSTVAPFLFP 133
           P+++GL+N  +  T +   PF  P
Sbjct: 28  PYVIGLMNTMTHTTNAFCLPFCGP 51


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 204 PFLVGLINGPSKCTPSTVAPFLFP 133
           P+++GL+N  +  T +   PF  P
Sbjct: 27  PYVIGLMNTMTHTTNAFCLPFCGP 50


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -2

Query: 406 LFAFCQTGNGMSKSNFDTKIREILDCFKT 320
           +FAFC   N M+      ++ ++ +  KT
Sbjct: 7   IFAFCICVNAMTIEELKIQLHDVQEICKT 35


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 406 LFAFCQTGNGMSKSNFDTKIREILDCFK 323
           +FAFC   N M+      ++R++ +  K
Sbjct: 7   IFAFCICVNAMTIEELKIQLRDVQEICK 34


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,490
Number of Sequences: 438
Number of extensions: 3258
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)