Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0844
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 136 2e-32
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 47 1e-05
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590... 31 0.60
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 30 1.8
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164... 29 2.4
07_01_0159 - 1116786-1117153,1117251-1119936 29 2.4
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630... 28 7.4
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 27 9.7
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791... 27 9.7
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 27 9.7
01_06_1186 + 35223272-35224723,35225536-35225610,35226245-352265... 27 9.7
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 136 bits (328), Expect = 2e-32
Identities = 76/163 (46%), Positives = 102/163 (62%), Gaps = 13/163 (7%)
Frame = +1
Query: 193 EVPLSLFATNRRRLANKLK-----SGQ----IVVLQGGEDVNHYDTDVQYVFRQEAYFTW 345
EVP+ L A NR RL L+ SG+ +V+LQGGE+ Y TD +FRQE+YF +
Sbjct: 19 EVPMELHAGNRDRLVAALRAHLSASGRPLRGLVLLQGGEEQTRYCTDHLELFRQESYFAY 78
Query: 346 VCGVREPGCYFALDVSTGKSYLFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIK 525
+ GVREPG Y A+D+ +G+S LF PRLP +Y VWMG++ S FK+ Y VD V+YVDEI
Sbjct: 79 LFGVREPGFYGAIDIVSGQSILFSPRLPADYAVWMGEIKPLSYFKDRYKVDMVFYVDEIT 138
Query: 526 DVLKSLMPE----TLLTLSGPNTDSGLTXREAIFNGIDEFNVD 642
VL+ + L L G NTDSG + A F G+++F+ D
Sbjct: 139 QVLQDRFSDHGKPLLFVLYGKNTDSGNYSKPASFEGMEKFDSD 181
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/108 (24%), Positives = 49/108 (45%)
Frame = +1
Query: 223 RRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGK 402
R++L L + ++ E D V Y FRQ + ++ G +PG L TG
Sbjct: 123 RKKLLEVLPEKSLAIIASAEQQMMTDV-VPYSFRQNGDYLYITGCAQPGGVAVLSEETGL 181
Query: 403 SYLFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLM 546
+F+P +E VW G+ +N + D+ + + E++ +L ++
Sbjct: 182 C-MFMPDTSKEDVVWQGQTAGVEAAENFFKADKAFPLSEMQKILPEMI 228
>08_01_0007 -
57681-57728,58260-58336,58418-58464,58808-58908,
59016-59108,59418-59540,59637-59755,60154-60510,
60888-61011
Length = 362
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -3
Query: 529 HLLSHQHNRLHQLHICF*SHYRHGVCPSRLHTPQEVWAQRG 407
H +H HN H +H ++ H P HTP RG
Sbjct: 49 HNHNHNHNHNHNIHNSHNHNHNHNAAPHPCHTPTPTPTPRG 89
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = -2
Query: 404 DLPVLTSRAK*QPGSLTPQTHVK*ASCLNTYCTSVS*WFTSSPPCKTTICPLL--SLFAN 231
DLP+++S + S TP T +K + Y SVS SS ++ +L S A
Sbjct: 428 DLPLISSAVRWTASSRTPSTPIKFPAISRWYSVSVSTSINSSSNLFSSAAAVLRPSTAAC 487
Query: 230 LRRF--VANKDNGTSRVPGPIDHVAAMFDDIM 141
L ++ + +D G + +DHV D++
Sbjct: 488 LVQYSMILERDAGAAVGAAVLDHVEESIRDML 519
>11_01_0209 -
1642473-1642579,1642783-1642826,1642935-1643023,
1643114-1643158,1643484-1643591,1643691-1643776,
1643917-1644004,1644211-1644387,1644720-1644795,
1644898-1644947,1645030-1645092,1645332-1645434,
1645513-1645615,1645731-1645791,1646268-1646308,
1646792-1646825
Length = 424
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -1
Query: 576 WARQCQQCFRHQTFEYIFYLINIIDFINCIYVFE 475
WA++ Q F + +F ++N+++ I I+ FE
Sbjct: 378 WAQKRQDAFFFPGDQVVFLMLNVVELIGLIFTFE 411
>07_01_0159 - 1116786-1117153,1117251-1119936
Length = 1017
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 260 ICPLLSLFANLRRFVANKDNGTSRVPGPIDHVAAMFDDIMKGNFI 126
I P ++L +NLR + +N T +P I ++ ++ I++GN +
Sbjct: 167 ITPNIALLSNLRNMRLHSNNLTGIIPPEIGNITSLNTVILQGNML 211
>07_03_0755 -
21261855-21261945,21262277-21262323,21262819-21263014,
21263239-21263340,21263602-21263678,21264037-21264236,
21264324-21264681,21265245-21265301,21265434-21266192,
21266287-21266468,21266651-21266813
Length = 743
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 199 PLSLFATNRRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYF 378
PL A + + G+I VL GG+ V +DT Y R++ + T + G
Sbjct: 472 PLKSMAVGKSYASTVALDGKIFVLGGGDGVCWFDTVDCYDRRRDDWTTCPSFTHDKGSLA 531
Query: 379 ALDVSTGKSYLF 414
A+ + GK Y +
Sbjct: 532 AVSFN-GKIYAY 542
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 149 HRTWQRRGLWALALLKCRYLCSQQTD 226
HR W+RR L L LL C + QQ D
Sbjct: 9 HRRWRRRLLPKLMLLLCAVVHGQQPD 34
>08_02_0251 -
14776308-14776495,14777624-14777708,14779125-14779160,
14779930-14780177,14780670-14780901,14781159-14781937,
14781987-14782155
Length = 578
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 460 HACSDFKNIYAVDEVYYVDEIKDVLKSLMPETLLTLSGPNTDSGL 594
H K Y VDE ++E + L PE L + N + GL
Sbjct: 14 HEAKAKKRAYLVDEEVQIEEEEPPLVEPQPEPTLVVGATNEEQGL 58
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +2
Query: 356 LENPVVILP*MLVQASLTSLCPDFLRSMKSGWANSMPVVTSKTYMQLMKSIML 514
++NP++ L +V ++T D+L + + W + + ++ TY L K+ +L
Sbjct: 199 IQNPIINLKGFMVGNAVTDDYHDYLGTFEYWWTHGL--ISDNTYHNLKKTCLL 249
>01_06_1186 +
35223272-35224723,35225536-35225610,35226245-35226585,
35226621-35227005,35227131-35227559
Length = 893
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 290 FTSSPPCKTTICPLLSLFANLRRFVANKDNGTSRVPGP 177
FT+ P T + L L L+ V KDNG R+ P
Sbjct: 342 FTTRQPVTTVLGKLKELAKRLKLKVKKKDNGVLRLAAP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,639,067
Number of Sequences: 37544
Number of extensions: 407851
Number of successful extensions: 879
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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