Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0840
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z66512-6|CAC70097.1|  278|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AB038503-1|BAB11968.1|  278|Caenorhabditis elegans galectin LEC-...    28   4.6  
AF025460-4|AAB70987.1|  156|Caenorhabditis elegans Hypothetical ...    28   6.1  
AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z99288-9|CAB16551.2|  335|Caenorhabditis elegans Hypothetical
           protein ZK262.10 protein.
          Length = 335

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 617 LNFSSWCFKFSRIFLGFFSVLDPFSL 540
           +N   W + F+ IF+ FF V DP ++
Sbjct: 274 VNIGYWTYWFASIFISFFPVFDPLAM 299


>Z81111-3|CAB03267.1|  334|Caenorhabditis elegans Hypothetical
           protein T01G5.3 protein.
          Length = 334

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 617 LNFSSWCFKFSRIFLGFFSVLDPFSL 540
           L+  +W +  S + + FF VLDP SL
Sbjct: 274 LDIGNWIYWTSTVAISFFPVLDPLSL 299


>Z66512-6|CAC70097.1|  278|Caenorhabditis elegans Hypothetical
           protein F52H3.7b protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 472 HLNLFNTDAKLVFSKFNFDNFGNKEKGSKTEKNPKKILENLKHQDEKFR 618
           H+++   + KLVF+ F+   +G +E+ S   K    I   ++  D KF+
Sbjct: 57  HVSVRFDEGKLVFNTFSKGEWGKEERKSNPYKKGDDIDIRIRAHDSKFQ 105


>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical protein
            F52H3.7a protein.
          Length = 1245

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 472  HLNLFNTDAKLVFSKFNFDNFGNKEKGSKTEKNPKKILENLKHQDEKFR 618
            H+++   + KLVF+ F+   +G +E+ S   K    I   ++  D KF+
Sbjct: 1024 HVSVRFDEGKLVFNTFSKGEWGKEERKSNPYKKGDDIDIRIRAHDSKFQ 1072


>AB038503-1|BAB11968.1|  278|Caenorhabditis elegans galectin LEC-2
           protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 472 HLNLFNTDAKLVFSKFNFDNFGNKEKGSKTEKNPKKILENLKHQDEKFR 618
           H+++   + KLVF+ F+   +G +E+ S   K    I   ++  D KF+
Sbjct: 57  HVSVRFDEGKLVFNTFSKGEWGKEERKSNPYKKGDDIDIRIRAHDSKFQ 105


>AF025460-4|AAB70987.1|  156|Caenorhabditis elegans Hypothetical
           protein F53A3.1 protein.
          Length = 156

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 596 FKFSRIFLGFFSVLDPFSLLPKLSKLNFENTNFASVLKRF 477
           F F  +F  FF++L  F    +L++L+F + NFA++L  F
Sbjct: 46  FSFLALFYSFFTILLRFF---ELTELHFMSFNFAAMLCNF 82


>AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6b protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 126 NFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEEKD 242
           +F   IFS+ P+S  T    ED+  +++    N+ E  D
Sbjct: 395 SFCHSIFSIAPISSNTFENAEDSGDDLFNNDSNDEESGD 433


>AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6a protein.
          Length = 841

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 126 NFIKGIFSVMPVSILTKGADEDADYEIYTGSKNENEEKD 242
           +F   IFS+ P+S  T    ED+  +++    N+ E  D
Sbjct: 395 SFCHSIFSIAPISSNTFENAEDSGDDLFNNDSNDEESGD 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,956,022
Number of Sequences: 27780
Number of extensions: 140824
Number of successful extensions: 617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)