Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0838
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    29   0.042
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.91 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.91 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.8  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   4.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 29.1 bits (62), Expect = 0.042
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +2

Query: 167 PGHVDREHTEVSDGSGVVRGKFAYVDPRHKVRTVDYVADKEGFHPILSDVPPEHPADSE 343
           P  VD E   VS GS       +Y  P  +  ++ YVAD+ GF    S +P   P   E
Sbjct: 60  PKQVDNETPVVSQGSD------SYTAPDGQQVSITYVADENGFQVQGSHIPTAPPIPPE 112


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 276 WLTRKASIRY*ATCLQSTQLTLNP 347
           W+   ++ ++   CLQ TQL +NP
Sbjct: 72  WIGELSATKFGFPCLQYTQLPVNP 95


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 276 WLTRKASIRY*ATCLQSTQLTLNP 347
           W+   ++ ++   CLQ TQL +NP
Sbjct: 72  WIGELSATKFGFPCLQYTQLPVNP 95


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 410 HPHPYETSVPRQSAAVAEATL-KHSELFRVIAE 505
           HPHP ET  P+    +  A     +EL  ++ E
Sbjct: 466 HPHPPETPGPQVETILQNACFCARNELMMILKE 498


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/39 (25%), Positives = 17/39 (43%)
 Frame = +2

Query: 320 PEHPADSESVALAKDRHFQLYSKIAEEHAQHPHPYETSV 436
           P+H   S S + A      +Y  ++   A H H  + +V
Sbjct: 69  PQHSGSSASTSPAARTTSSMYPYVSAAAAHHHHQQQQAV 107


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 655 NNQISRNLNNYDTN 696
           NN  + N NNY+ N
Sbjct: 331 NNNYNNNYNNYNNN 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,923
Number of Sequences: 438
Number of extensions: 3867
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)