Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0834
         (626 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0847 - 6451525-6451678,6452870-6453066,6454300-6454591,645...    30   1.3  
01_01_0205 + 1764034-1767601,1767934-1767944                           28   7.0  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    27   9.2  
02_05_0104 - 25858414-25858509,25858711-25858782,25859081-258591...    27   9.2  

>06_01_0847 -
           6451525-6451678,6452870-6453066,6454300-6454591,
           6454622-6454654,6454869-6455102,6455204-6455259,
           6455552-6456754
          Length = 722

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 554 PRYYIDGTYVNTTDSISNM-TNLFNVYNIPPFYIELNNMLSILCFLHCNCCAHP*YRNAF 378
           P   +DG YV TT+ +  + T+  +      F+I L NM++I   + C   A P  R  F
Sbjct: 503 PIVMVDG-YVRTTEELQRVETHELSREEKLAFFINLYNMMAIHALVTCGHPAGPLDRRKF 561

Query: 377 LPEYK 363
             ++K
Sbjct: 562 FGDFK 566


>01_01_0205 + 1764034-1767601,1767934-1767944
          Length = 1192

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = -1

Query: 590 INVLPELVNL*SPRYYIDGTYVNTTDSISNMTNLFNVY-NIP----PFYIELNNMLSILC 426
           ++ + +LV+L S       TY +   SI N+TNL ++Y N P    P    + N+ S+  
Sbjct: 447 MSAIGDLVDLQSLDMSNCNTYSSMPSSIGNLTNLKSLYINSPGFLGPMPAAIGNLKSLKS 506

Query: 425 FLHCNC 408
            +  NC
Sbjct: 507 MVFSNC 512


>04_04_0214 -
           23674270-23676858,23677574-23680843,23680941-23681119,
           23681200-23681559,23681645-23682086,23682199-23682332,
           23682479-23682680
          Length = 2391

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 70  YDEEHGNISFVAKLLLVST 14
           Y E HGN S++A+ LL ST
Sbjct: 504 YQELHGNASYIAQKLLTST 522


>02_05_0104 -
           25858414-25858509,25858711-25858782,25859081-25859156,
           25859286-25859334,25859826-25860012,25860164-25860340,
           25860519-25860632
          Length = 256

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 431 LCFLHCNCC 405
           LC++HCNCC
Sbjct: 25  LCYVHCNCC 33


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,098,541
Number of Sequences: 37544
Number of extensions: 256159
Number of successful extensions: 391
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)