Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0834
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.2  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.4  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.8  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.8  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = -1

Query: 626 KNSYTYLYL*VRINV-----LPELVNL*SPRYYIDGTYVNTTDSISNMTNLFNVY 477
           K+  T L+L +R+ V     +  +V L  PRY + G  VNT   +   +    ++
Sbjct: 507 KDRSTGLHLQIRVGVHSGAVVAGIVGLKMPRYCLFGDSVNTASRMEATSQAMQIH 561


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -1

Query: 464 FYIELNNMLSILCFLHCNCCAH 399
           FY+    ML I C L+C    H
Sbjct: 201 FYVPCIVMLGIYCRLYCYAQKH 222


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 359 YFCIQVEMRSYTKGGRSSYSARNKEYL 439
           YF    E     KG R++Y A   E+L
Sbjct: 555 YFIFDAEKTGLGKGPRTTYCAFWNEFL 581


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 473 IPPFYIELNNMLSILC 426
           I PF+ +++  LS+LC
Sbjct: 54  INPFFCDMSPSLSLLC 69


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -1

Query: 473 IPPFYIELNNMLSILC 426
           I PF+ +++ +LS++C
Sbjct: 53  INPFFCDMSPLLSLVC 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,169
Number of Sequences: 438
Number of extensions: 3943
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)