Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0833
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0685 + 20039318-20040433,20040574-20040982,20042906-200429...    30   1.6  
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581...    29   4.9  
01_03_0062 - 12140514-12141851                                         28   8.5  

>08_02_0685 +
           20039318-20040433,20040574-20040982,20042906-20042973,
           20043336-20043518,20043641-20043964,20045653-20045694
          Length = 713

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 122 GFLNCS-LVLKVGHFFKLIPYETVLLTSALHDIANIVTL 9
           GF N   L L VGHFF +IPY  + L   L+   +I  +
Sbjct: 465 GFKNVGYLWLAVGHFFLIIPYAVLRLRRFLNQFVSIFVM 503


>01_05_0080 -
           17957276-17957676,17957810-17957921,17958001-17958126,
           17958199-17958331,17960069-17960193,17960314-17960409,
           17960430-17960621,17960694-17960800,17961318-17961426,
           17961538-17961624,17963017-17963103,17964254-17964379
          Length = 566

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 18/66 (27%), Positives = 29/66 (43%)
 Frame = +3

Query: 321 LHFLTSFK*NTFCDFVVLTVLSSFFISLSYPNNIQRLFLNLPGCYCSATLI*QILTHTFS 500
           LH L  +      D VV+ +L S    L+ P N+ R   +LP  +    ++  +L +   
Sbjct: 204 LHPLVPYFSYFIADEVVILLLESILCELALPYNVTRSLGDLPVLFALMRVVQSLLHNPHI 263

Query: 501 HTETVL 518
           H E  L
Sbjct: 264 HIEPYL 269


>01_03_0062 - 12140514-12141851
          Length = 445

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 195 SAYFNQLTTAQFISYPVPMLAPFWRIFELF 106
           +A+FNQL    +I Y    LAP +R  + F
Sbjct: 363 AAFFNQLRVCSYIDYDDHYLAPVYRDVDAF 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,241,417
Number of Sequences: 37544
Number of extensions: 303077
Number of successful extensions: 471
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)