Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0828
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          24   1.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.1  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    21   9.4  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    21   9.4  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 543 RKVNNNWLHADHA*FLQ*KST 481
           RK+  NW+H D + FL  KST
Sbjct: 62  RKLEENWIHVDIS-FLPEKST 81


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 525 SYY*PCVIMLLDACKL 572
           S+Y PC++ML   C+L
Sbjct: 200 SFYVPCIVMLGIYCRL 215


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 192 IEDLEILNDFNSYFNR 239
           I DL + +D N Y NR
Sbjct: 116 ISDLFVFDDLNDYINR 131


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 453 NVYWYCNVIRYFFIAGI 503
           NV  Y N  R+FFI G+
Sbjct: 5   NVIKYINFDRFFFIEGM 21



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +3

Query: 465 YCNVIRYFFIAGIMHGQRVTSYY 533
           YCN++    + GI+    V  +Y
Sbjct: 361 YCNIVATHLVCGILGSILVPFFY 383


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 305 TTYKLRIVPLNEI 267
           TTY LRIV  NEI
Sbjct: 946 TTYHLRIVAENEI 958


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 346 KLLMTYHTPQIGKADFIYRTFFKVPIKYI 432
           K+  T  TP I    F +     VP+KY+
Sbjct: 492 KICWTITTPAICVGVFTFNIIKFVPVKYL 520


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +1

Query: 346 KLLMTYHTPQIGKADFIYRTFFKVPIKYI 432
           K+  T  TP I    F +     VP+KY+
Sbjct: 545 KICWTITTPAICVGVFTFNIIKFVPVKYL 573


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 518 CNQLLLTLRYYATGCMQITVGDF 586
           CN LL ++      C+Q+ VG +
Sbjct: 7   CNPLLYSVAMSQRLCIQLVVGPY 29


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 518 CNQLLLTLRYYATGCMQITVGDF 586
           CN LL ++      C+Q+ VG +
Sbjct: 6   CNPLLYSVAMSQRLCIQLVVGPY 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,501
Number of Sequences: 438
Number of extensions: 3010
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)