Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0821
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.5  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.3  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   3.3  
SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr...    26   5.7  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.6  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    25   10.0 

>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 650 SLFLRN*QTDLQILKKTCTEMITNFTIFTHSFARSLYAAIFFELLF 513
           S FL N Q   +I  K    +ITN+++ T S  R L+ + +FE  F
Sbjct: 292 SEFLFNSQISPKIKSKK-NSLITNYSLSTSSKERMLFLSSYFENCF 336


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 188 HIYVQNFLHTFLSYNFYPYIYCNRIAKTELTSTINIIKMKTILHYFYTETTPIIFY 355
           HI++   L   L +NFY Y      A  +L S +  +    +L + Y  T  I+++
Sbjct: 79  HIFLPFILTLLLYHNFYNYF---DQALADLNSVVKYVIETIVLIFTYVMTVIIVYF 131


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/56 (26%), Positives = 26/56 (46%)
 Frame = +2

Query: 188 HIYVQNFLHTFLSYNFYPYIYCNRIAKTELTSTINIIKMKTILHYFYTETTPIIFY 355
           HI++   L   L +NFY Y      A  +L S +  +    +L + Y  T  I+++
Sbjct: 79  HIFLPFILTLLLYHNFYNYF---DQALADLNSVVKYVIETIVLIFTYVMTVIIVYF 131


>SPCC1672.03c |||guanine deaminase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 230 NFYPYIYCNRIAKTELTSTINIIKMKTILHYFYTETTPII 349
           N  P  YC + A++ L +T  +I   +IL       TPII
Sbjct: 170 NLSPDHYCEKSAESSLEATRQLISYMSILDPKREMVTPII 209


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 275 ILSLQCDYNKYKDKNYMIKRYVRSFVHKCVQVLMTSTDSGATT 147
           +L L C Y KYKD +++       F  K + +L+  T  G  T
Sbjct: 44  LLLLGCLYGKYKDDDFV------DFFDKAIPLLVPQTHKGLDT 80


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 272 LSLQCDYNKYKDK--NYMIKRYVRSFVH 195
           +SL C +N+Y D    Y+ +  VRS +H
Sbjct: 350 VSLDCSFNEYNDPLITYLNREDVRSSLH 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,525
Number of Sequences: 5004
Number of extensions: 52051
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)