Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0820
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    23   2.6  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    23   2.6  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   3.4  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   6.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   6.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   6.0  

>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 382 CDEKRTFCTAASRLYLEPV*KNIEI 456
           C  KR      + LY+EPV K IE+
Sbjct: 72  CVMKRIEMLKGTELYVEPVYKMIEV 96


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 382 CDEKRTFCTAASRLYLEPV*KNIEI 456
           C  KR      + LY+EPV K IE+
Sbjct: 72  CVMKRIEMLKGTELYVEPVYKMIEV 96


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 207 YKIIR*PNCFFCMPLNLNICIIHFIGFVNINLILIQ 100
           Y  I  P CF C  L   I  +H    V  +L+L++
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLE 442


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -1

Query: 207 YKIIR*PNCFFCMPLNLNICIIHFIGFVNINLILIQ 100
           Y  I  P CF C  L   I  +H    V  +L+L++
Sbjct: 407 YSRIVFPVCFVCFNLMYWIIYLHISDVVADDLVLLE 442


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 655 LTENLTYQNEI*IFLYHLFCDMFS*KKVTSKDVHY 551
           +T NL Y       LY++  + F        D+HY
Sbjct: 261 MTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHY 295


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 655 LTENLTYQNEI*IFLYHLFCDMFS*KKVTSKDVHY 551
           +T NL Y       LY++  + F        D+HY
Sbjct: 261 MTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHY 295


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/35 (28%), Positives = 15/35 (42%)
 Frame = -3

Query: 655 LTENLTYQNEI*IFLYHLFCDMFS*KKVTSKDVHY 551
           +T NL Y       LY++  + F        D+HY
Sbjct: 261 MTNNLYYSPVASTSLYYVNTEQFRTSDYQQNDIHY 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,168
Number of Sequences: 438
Number of extensions: 3160
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)