Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0819
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz... 242 3e-65
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 136 2e-33
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo... 123 2e-29
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2... 122 3e-29
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch... 119 3e-28
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 119 3e-28
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 118 7e-28
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch... 113 2e-26
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 102 4e-23
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac... 93 3e-20
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 86 3e-18
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch... 84 1e-17
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc... 77 3e-15
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos... 46 5e-06
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 29 0.73
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 28 1.3
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||... 27 2.2
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.9
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 5.2
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar... 25 6.8
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 6.8
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 9.0
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 25 9.0
>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 242 bits (593), Expect = 3e-65
Identities = 107/149 (71%), Positives = 128/149 (85%)
Frame = +1
Query: 142 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 321
MST ARRRLMRDFKR+Q+DPP GVS +P +N+M+WNAVI GP DTPFEDGTFKL + F
Sbjct: 1 MSTTARRRLMRDFKRMQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFD 60
Query: 322 EEYPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPKPNS 501
E+YPNKPP V+FVS MFHPNVYA+G +CLDILQNRWSPTYDV+AILTSIQSLL+DP S
Sbjct: 61 EQYPNKPPLVKFVSTMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNAS 120
Query: 502 PANSMAAQLYKENRREYEKRVKACVEQSF 588
PAN+ AAQL++EN++EY +RV+ VE S+
Sbjct: 121 PANAEAAQLHRENKKEYVRRVRKTVEDSW 149
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 136 bits (329), Expect = 2e-33
Identities = 58/134 (43%), Positives = 86/134 (64%)
Frame = +1
Query: 154 ARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYP 333
A +R+ R+ L +DPP+ S P +++ W A I GP D+P+ G F L+I F +YP
Sbjct: 2 ALKRINRELADLGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYP 61
Query: 334 NKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPKPNSPANS 513
KPP V F ++++HPN+ ++G ICLDIL+++WSP +S +L SI SLL+DP P+ P
Sbjct: 62 FKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
Query: 514 MAAQLYKENRREYE 555
A +YK +R YE
Sbjct: 122 EIAHVYKTDRSRYE 135
>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 123 bits (297), Expect = 2e-29
Identities = 59/152 (38%), Positives = 91/152 (59%), Gaps = 14/152 (9%)
Frame = +1
Query: 154 ARRRLMRDFKRLQEDPPTGVSGAPT-DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEY 330
A RRLM+++K L E+ P G++ P+ +++ W+ +I GP TPFE G + T++F +Y
Sbjct: 6 ALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDY 65
Query: 331 PNKPPTVRFVSKMFHPNVYADGGICLDIL-------------QNRWSPTYDVSAILTSIQ 471
P PPT++F + FHPNVY DG +C+ IL RWSP V IL S+
Sbjct: 66 PLGPPTLKFECEFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVM 125
Query: 472 SLLSDPKPNSPANSMAAQLYKENRREYEKRVK 567
S+L++P S AN A ++++E+R EY + V+
Sbjct: 126 SMLAEPNDESGANIDACKMWREDREEYCRVVR 157
>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 176
Score = 122 bits (295), Expect = 3e-29
Identities = 57/134 (42%), Positives = 83/134 (61%), Gaps = 1/134 (0%)
Frame = +1
Query: 160 RRLMRDFKRLQEDPPTGVSGAP-TDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPN 336
+RL + L G+S P +D+N++ W I GP DT +E FK+++ F YP
Sbjct: 31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPY 90
Query: 337 KPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPKPNSPANSM 516
PPT+ F S M+HPNV G ICLDIL+++WS Y+V IL S+QSLL +P SP N+
Sbjct: 91 SPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQ 150
Query: 517 AAQLYKENRREYEK 558
AA+L+ ++ EY++
Sbjct: 151 AAELWSKDPIEYKR 164
>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 148
Score = 119 bits (287), Expect = 3e-28
Identities = 49/127 (38%), Positives = 80/127 (62%)
Frame = +1
Query: 160 RRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNK 339
+R++++ + L DPP G+ APT++N+ + + GP + +E G F L + +EYP
Sbjct: 5 KRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMM 64
Query: 340 PPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPKPNSPANSMA 519
PP VRF++K++HPNV G ICL L+ WSP + +L SIQ+L+ P P+ P ++
Sbjct: 65 PPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDV 124
Query: 520 AQLYKEN 540
A+++KEN
Sbjct: 125 AKIWKEN 131
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 119 bits (287), Expect = 3e-28
Identities = 59/161 (36%), Positives = 93/161 (57%), Gaps = 14/161 (8%)
Frame = +1
Query: 145 STPARRRLMRDFKRLQEDPPTGVS-GAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 321
S+ + + L + K +Q++PP G S G D +I W +I GP DT +E G F T+ F
Sbjct: 3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFP 62
Query: 322 EEYPNKPPTVRFVSKMFHPNVYADGGICLDILQ-------------NRWSPTYDVSAILT 462
++YP PP ++F ++++HPNV+ +G +C+ IL RW P + IL
Sbjct: 63 QDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILI 122
Query: 463 SIQSLLSDPKPNSPANSMAAQLYKENRREYEKRVKACVEQS 585
S+ S+LS P SPAN AA+ ++EN +E++KRV+ V +S
Sbjct: 123 SVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRS 163
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 118 bits (284), Expect = 7e-28
Identities = 61/150 (40%), Positives = 84/150 (56%), Gaps = 7/150 (4%)
Frame = +1
Query: 142 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNN-----IMIWNAVIFGPHDTPFEDGTFKL 306
MS+ + RL + K+ + D P G P ++ +M W I G T +E G +KL
Sbjct: 1 MSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKL 60
Query: 307 TIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDIL--QNRWSPTYDVSAILTSIQSLL 480
T+ F EEYP +PP RF +FHPNVY G +CL IL + W P + IL IQ LL
Sbjct: 61 TMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLL 120
Query: 481 SDPKPNSPANSMAAQLYKENRREYEKRVKA 570
DP SPA + A ++K+++ EYEKRV+A
Sbjct: 121 DDPNIASPAQTEAYTMFKKDKVEYEKRVRA 150
>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 217
Score = 113 bits (273), Expect = 2e-26
Identities = 51/143 (35%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Frame = +1
Query: 142 MSTPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFT 321
MS RR+ ++ +Q+D G+ +++I + GP TP+E G F + IE
Sbjct: 1 MSDNRSRRIAKELADVQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIP 60
Query: 322 EEYPNKPPTVRFVSKMFHPNVYAD-GGICLDILQNRWSPTYDVSAILTSIQSLLSDPKPN 498
+YP +PP + F +K++HPNV + G ICLDIL+++WSP Y + + L S+QSLL P+P+
Sbjct: 61 IDYPFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPS 120
Query: 499 SPANSMAAQLYKENRREYEKRVK 567
+P ++ AQ+Y +N +++ + +
Sbjct: 121 NPQDAQVAQVYLQNYQQFVRTAR 143
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 102 bits (245), Expect = 4e-23
Identities = 46/147 (31%), Positives = 83/147 (56%), Gaps = 1/147 (0%)
Frame = +1
Query: 145 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTE 324
S + RRL +++ L+E P + D+N+ W GP D+ + G F +++F
Sbjct: 5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPL 64
Query: 325 EYPNKPPTVRFVSKMFHPNVYADGGICLDIL-QNRWSPTYDVSAILTSIQSLLSDPKPNS 501
+YP +PPT+ F ++++HPN ++G +CL IL Q + P+ + ++L I LL +P P+
Sbjct: 65 DYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDD 124
Query: 502 PANSMAAQLYKENRREYEKRVKACVEQ 582
P + A+ Y+ +R ++K + VEQ
Sbjct: 125 PLVASIAEQYRNDRPSFDKIARDYVEQ 151
>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 93.1 bits (221), Expect = 3e-20
Identities = 48/128 (37%), Positives = 76/128 (59%), Gaps = 3/128 (2%)
Frame = +1
Query: 160 RRLMRDFKRLQEDPPTGVS--GAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYP 333
+RL +++ Q +G+ TD ++ W AVI GP +TP+E G + L I E YP
Sbjct: 6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYP 65
Query: 334 NKPPTVRFVSKMFHPNV-YADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPKPNSPAN 510
PP+V F +K+ HPN+ + +G +C+DIL+ WSP + + + +I SLLS+ +SP N
Sbjct: 66 ISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLN 125
Query: 511 SMAAQLYK 534
AA+L +
Sbjct: 126 VDAAKLLR 133
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 86.2 bits (204), Expect = 3e-18
Identities = 42/149 (28%), Positives = 81/149 (54%)
Frame = +1
Query: 148 TPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEE 327
+PA+ R+ +D L E P T + P + + + I P + ++ G FK I+ +
Sbjct: 22 SPAQIRIQKDVTDL-EIPSTMSTSWPDPIKLNVLHLEI-RPDEGYYKGGKFKFRIQIDDN 79
Query: 328 YPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPKPNSPA 507
YP+ PP V+ ++K++HPN+ +G +CL+IL+ W+P ++++IL +Q L P P
Sbjct: 80 YPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPL 139
Query: 508 NSMAAQLYKENRREYEKRVKACVEQSFID 594
N AA ++ + + RV+ ++ ++
Sbjct: 140 NKEAAADLHKDPQGFASRVRTAMKGGLVN 168
>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 84.2 bits (199), Expect = 1e-17
Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 3/145 (2%)
Frame = +1
Query: 142 MSTPARRRLMRD-FKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEF 318
MS+P RRR+ D K L D + ++N+ + GP +TP+ G +K+ +E
Sbjct: 1 MSSP-RRRIETDVMKLLMSDYEVTL----VNDNMQEFYVRFHGPSETPYSGGIWKVHVEL 55
Query: 319 TEEYPNKPPTVRFVSKMFHPNV-YADGGICLDILQNRWSPTYDVSAIL-TSIQSLLSDPK 492
EYP K P++ FV+++FHPN+ G +CLD++ WSP +D+ I + LL P
Sbjct: 56 PSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPN 115
Query: 493 PNSPANSMAAQLYKENRREYEKRVK 567
+ P N AA L Y +V+
Sbjct: 116 ASDPLNGEAAALLLREPNTYYAKVR 140
>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 76.6 bits (180), Expect = 3e-15
Identities = 42/118 (35%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Frame = +1
Query: 145 STPARRRLMRDFKRLQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTE 324
S A +RLM+++ LQ++P V P NI+ W+ +I GP DTP+E G + T+ F
Sbjct: 3 SKGAYKRLMKEYLALQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPP 62
Query: 325 EYPNKPPTVRFV--SKMFHPNVYADGGICL---DILQNRWSPTYDVSAILTSIQSLLS 483
+YP KPP +R + S F N +CL D W+P++ VS IL + S ++
Sbjct: 63 DYPFKPPAIRMITPSGRFQTNT----RLCLSFSDFHPKSWNPSWMVSTILVGLVSFMT 116
>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
Mms2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 139
Score = 46.0 bits (104), Expect = 5e-06
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Frame = +1
Query: 229 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGIC- 405
D + WNA I GP + E+ + L I YP+ PP V FVS++ P V + G
Sbjct: 35 DITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVN 94
Query: 406 ---LDILQNRWSPTYDVSAILTSIQ 471
+D L++ W Y + +L ++
Sbjct: 95 PHKIDCLRH-WKREYSMETVLLDLK 118
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 28.7 bits (61), Expect = 0.73
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 103 FLLLSWSNFDTVILKLCITNVRIKWTFL 20
FL S NFDT++ K IT+ + W F+
Sbjct: 497 FLRPSLINFDTILRKSAITSFSVLWDFI 524
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 63 SITVSKLLQLKSRKISLCYNLGIENQ 140
+++ SKL QLKS S+C N G+ Q
Sbjct: 1021 TLSTSKLFQLKSEANSICINRGLLEQ 1046
>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 2.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 289 DGTFKLTIEFTEEYPNKPPTV 351
D + +L I+F +YPN PTV
Sbjct: 38 DSSVRLNIQFPLDYPNSAPTV 58
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 400 ICLDILQNRWSPTYDVSAILTSIQSLLSD 486
+CL + P+++ SA TS+ +LSD
Sbjct: 57 LCLSVFSKLQHPSFERSAFFTSVGLILSD 85
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 5.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = -1
Query: 425 LFCRISRQIPPSA*TFG*NIFDTNRTVGGLFGYSSVNS 312
LF R ++ P++ FD + T+GG+ G +S+++
Sbjct: 396 LFVRNGARLGPTSIYHAWKAFDVDSTIGGMCGKTSIDT 433
>SPAC9G1.05 |||actin cortical patch component Aip1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 6.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -1
Query: 362 DTNRTVGGLFGYSSVNSIVSL 300
D+ +VG +FG+SSV + VSL
Sbjct: 134 DSGNSVGEIFGHSSVVNAVSL 154
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Frame = +1
Query: 166 LMRDFKRLQEDPPTGVSGAPTDNNIMI---WNAV 258
L + +RL P G SG P N +++ W AV
Sbjct: 70 LFQSLRRLNNSSPKGKSGVPKKNIVVLGSGWGAV 103
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.0 bits (52), Expect = 9.0
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -3
Query: 309 CEFECSIFKWSIMRAKYHSIPDHNIVISWS 220
C FE ++SI + +HNI++ W+
Sbjct: 1629 CNFESDDIQYSIDVVYSRKLKEHNIILWWN 1658
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.0 bits (52), Expect = 9.0
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Frame = +1
Query: 409 DILQNRWS--PTYDVSAILTSIQSLLSDPKPNSPANSMAAQLYKENRR---EYEKRVKAC 573
+ LQN+ S P LT + + S +++++ + +N +YE+R+K
Sbjct: 968 NFLQNKLSGNPIISTPNFLTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVL 1027
Query: 574 VEQSFID*QGTLL 612
E +ID + T+L
Sbjct: 1028 QELGYIDAERTVL 1040
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,683
Number of Sequences: 5004
Number of extensions: 60453
Number of successful extensions: 194
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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