Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0819
         (629 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          24   1.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.4  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   4.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   7.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.9  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 387 RRWWNLPRYPAK 422
           +RWW+ PR PA+
Sbjct: 43  KRWWSRPREPAQ 54


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 460 TSIQSLLSDPKPNSPANSMAAQLYKENRREYEKRVK 567
           T+I  L++ P P + ANS A +LY +    Y + ++
Sbjct: 3   TAISCLVA-PFPGASANSEAKRLYDDLLSNYNRLIR 37


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 246 DHNIVISWSS*HTCRWIL 193
           DHN  I WS  H C  +L
Sbjct: 33  DHNGSIYWSMYHLCTVVL 50


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -1

Query: 356 NRTVGGLFGYSSVNSIVS 303
           NR +GG+ GY+ + +++S
Sbjct: 415 NRFLGGIGGYNGLPTVMS 432


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 409 DILQNRWSPTYDVSAILTSIQSLLS 483
           ++L+NRW  T D   +  S+  L S
Sbjct: 106 EVLENRWLFTTDWCDVWRSLDVLFS 130


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 339 TPNSTICIKNVSSKCLRR 392
           +PNSTI +     KC RR
Sbjct: 96  SPNSTIAVCVCMRKCPRR 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,062
Number of Sequences: 438
Number of extensions: 3927
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)