Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0812
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    28   1.3  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   1.8  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    27   2.3  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    27   2.3  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    27   3.1  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   4.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.1  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.4  

>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = -1

Query: 345 WFDRIL--IESFQVPEYYICR-SLNGYFSFTSF--LV*SQNLVDMLTRSQI 208
           W+ R+L  I+SF    Y+ICR S+     F +F  +   +NL   +++S +
Sbjct: 107 WYSRVLFLIQSFPTRLYHICRNSIKSILQFQNFSNIFAKKNLFPKVSKSDV 157


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
           Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 406 FSKPLVLFMGPWSGGKSSIVNYLTGLEFTEWSLRTGAEPSPAYFNI 543
           F+KPL   +G     +SS+ N+L+ +  T +  +T       YF +
Sbjct: 376 FNKPLFKLLGSLVEHRSSVPNHLSHMSITRFEDKTKKSRQYRYFTL 421


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +1

Query: 274 ITVERSADIVLRDLKRLYENSIKPLEGLYKY-RDLSNR--HFGDPE 402
           +  + +  + L ++  LYE+ IKP +  YKY R + +R  HF   E
Sbjct: 450 LMAKETKGLTLEEVNELYESDIKPWDS-YKYVRQIESRRIHFSKEE 494


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
 Frame = +1

Query: 244 RLDEEASEAEITVERSADIVLRDLKRLYENSIKPLEGLYKYRDLSNRHFGD---PEIFSK 414
           +L E  +  E +++ S +  L D++     +IK  E L + +D  + H       E+  K
Sbjct: 184 KLIEYRAFLEASIDFSEEHELDDIE-----TIKLFEELNEMKDEIDAHIEGGKCKEVLRK 238

Query: 415 PL-VLFMGPWSGGKSSIVNYLTGLEFTEWSLRTG 513
            + V  +GP + GKSS++N L     +  S ++G
Sbjct: 239 GINVAILGPSNAGKSSLINLLANRRISIVSPQSG 272


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +1

Query: 166 APEEDLLLTGEIPENLRSREHINQILRLDEEASEAEITVERSADIVLRDLKRLYE----- 330
           A +EDL+  GE   +  +  + +Q LR  +  SEA  TV       L +LK+ YE     
Sbjct: 678 ARQEDLI-RGEQKVSHSNCLYADQTLRPSQPPSEALKTVVNQLTNELMELKKRYEKLSDR 736

Query: 331 -NSIKPLEGLYKYRDLSNR 384
            NS+ P    +K +++ N+
Sbjct: 737 YNSLTPGYHKHKRQEIKNK 755


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 640 PPILDQTSASQRTSNRRPVAYRPKLEDLFHALGY 539
           PP +  +S++    +  PVAY+P  + +   LGY
Sbjct: 367 PPTVQTSSSAAPVDSAEPVAYQPIKKPIDPMLGY 400


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +1

Query: 19  DKEDVSKENDEKQEQDSKEDNI 84
           +K+D +K+ +E+QEQ+ +E+ I
Sbjct: 397 EKDDENKDVEEEQEQEQEEEQI 418


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = +1

Query: 280 VERSADIVLRDLKRLYENSIKPLEG--LYKYRDLSNRHFGDPE--IFSKPLVLFM 432
           + R A  +L D+K + +N  K LEG  L + R L  +   + E  IF K L L +
Sbjct: 203 LRRWACSILSDVKTISDNEFKILEGPLLQEIRSLDQKKENENEMQIFLKGLSLLL 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,031
Number of Sequences: 5004
Number of extensions: 43477
Number of successful extensions: 114
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)