Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0812
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.1  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.9  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +1

Query: 16  GDKEDVSKENDEKQEQDSKEDN 81
           G++++ +K+ND KQ  + + DN
Sbjct: 492 GNRQNGNKQNDNKQNGNRQNDN 513



 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +1

Query: 16  GDKEDVSKENDEKQEQDSKEDN 81
           G++++ +++ND KQ  + + DN
Sbjct: 457 GNRQNDNRQNDNKQNGNRQNDN 478



 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +1

Query: 19  DKEDVSKENDEKQEQDSKEDN 81
           +K++ +++ND KQ  + + DN
Sbjct: 468 NKQNGNRQNDNKQNGNRQNDN 488


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -1

Query: 408 EYFRVTKMTIT*VSVFVKTF*WFDRILIESFQVP 307
           +YF +    +  V +   T+ WF+++ ++ F VP
Sbjct: 243 DYFDIPNELVLEVPLSHPTYDWFEKLELKWFAVP 276


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 433 GPWSGGKSSIVNYLTGLEFTEWSLRTG 513
           GP S G SS+++  TG+++     R G
Sbjct: 294 GPNSQGPSSVIDTNTGVDYFTQINRNG 320


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -3

Query: 82  CCLLYCLVLVFHRSPLIHLPYLLVPIP 2
           CC  YC+ L+   S  I+  Y L   P
Sbjct: 458 CCKGYCMDLLKELSKTINFTYSLALSP 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.134    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,552
Number of Sequences: 438
Number of extensions: 2887
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)