Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0811
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    42   8e-05
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    37   0.003
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   5.7  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.5  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    25   9.9  
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    25   9.9  

>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 8/61 (13%)
 Frame = +1

Query: 232 PLIIAHRGAS-GYV-------PEHTLGSYALSITMGADYIEPDLVMTKDGVLVARHDNEL 387
           PL+IAHRG    YV       PE+T+ ++  ++  GAD +E D+ +TKD V+   HD  L
Sbjct: 32  PLVIAHRGKCLTYVYRYKAKYPENTILAFQQAVKAGADCVETDVRLTKDEVVCILHDRNL 91

Query: 388 S 390
           +
Sbjct: 92  N 92


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
 Frame = +1

Query: 238 IIAHRGASGYVP--------EHTLGSYALSITMGADYIEPDLVMTKDGVLVARHD 378
           +I HRG     P        E+TL S+  +  +GA Y+E D+ MTKD V V  HD
Sbjct: 749 VIGHRGLGKNQPDRLSLQLGENTLQSFIKAADLGASYVELDVQMTKDMVPVVYHD 803


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 482 EDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPTFQEIISLAKG 616
           ++F  AE+K   A+E +  I    + +DG   I + +E+I  AKG
Sbjct: 343 KEFQHAEVKLSEAKENLESIVTNQSDIDG--KISSKEEVIGRAKG 385


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = -3

Query: 508  FYFGQCKIFREPTGDSRSVHCLSPVACSEFKYDLRRRLSNSV 383
            FY+G+   F   +  +R++ CL  + C   +  LR R S+ +
Sbjct: 1312 FYYGRGHKFLAKSYITRALSCLKNIGCYGVENKLRSRYSDLI 1353


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 417 NTTCDVGCQTQFVVMSGHKYPVFR 346
           +T CDV   + FVV    +YP  R
Sbjct: 53  DTVCDVSSNSTFVVKCNRQYPCTR 76


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 415 YDLRRRLSNSVRCHVGPQVPRLSS--LPDQVRCNQLPWL 305
           YD  R+L+ S+R     + PRLSS  LP Q+R   L W+
Sbjct: 193 YDCARKLAKSLRFANVSRDPRLSSELLPFQMRV--LEWM 229


>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 455 GSAITGWFTEDFTLAEIKTLRARERIPDIRAGNARMDGTFTIPT 586
           GS ITG   E+  L  I++L+    +PDI   N    G F +PT
Sbjct: 200 GSYITG---EESAL--IQSLQGEFPVPDIPINNTITSGLFGLPT 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,832,059
Number of Sequences: 5004
Number of extensions: 61506
Number of successful extensions: 194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)