Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0809
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        24   6.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   7.9  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    24   7.9  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    24   7.9  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    24   7.9  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
 Frame = +1

Query: 4   SSTVDTIPVATVWNGCINMVDVARFYVSAHEVSGTAVDLEED------LPTELDIVGRIN 165
           S+ VD + + T +    N  D+A         S   + LEE+      LP   ++    N
Sbjct: 472 STIVDAVNITTAYASSKNPFDIASIVARLFLRSRKLIPLEEECAVQYHLPKREELQSNSN 531

Query: 166 PDTVWEYIGKMKKA 207
              + E  GK ++A
Sbjct: 532 KTVIIEISGKSQEA 545


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +2

Query: 107  LQSTWKKICPQNLI 148
            LQ++WK++C +N I
Sbjct: 3906 LQNSWKRLCQKNAI 3919


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +1

Query: 133 PTELDIVGRINP-DTVWEYIGKMKKASNKDIIILRLQAG 246
           PT    V RI   DT W  +GK+     K    L L  G
Sbjct: 99  PTSHSNVTRIQEIDTAWSRLGKLASNCEKQPASLNLMVG 137


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 88  LKHRILQHLPCLYIHSR 38
           L  R++ H+PC Y+ +R
Sbjct: 57  LLDRVISHVPCTYLFAR 73


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +3

Query: 225 YFKTSSW*LMRKKCHTSHC 281
           +F T+SW   RKK    HC
Sbjct: 47  HFSTTSWRACRKKSAPLHC 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,394,283
Number of Sequences: 5004
Number of extensions: 26087
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)