Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0809
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0218 + 14983132-14984658,14984762-14984869,14984964-149851... 29 1.4
06_01_0069 + 579757-580004,580579-580675 28 2.4
06_03_0750 - 24140988-24141037,24141108-24141345,24142158-241422... 27 5.5
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 27 5.5
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 27 5.5
03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968 27 5.5
11_01_0633 - 5075565-5075707,5076777-5076930,5077021-5077182,507... 26 7.2
06_01_1005 - 7810210-7810907,7811005-7811080,7811180-7811368,781... 26 7.2
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420... 26 7.2
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 26 7.2
10_07_0169 - 13774003-13774551,13774576-13774655,13775790-13775823 26 9.6
06_03_0721 - 23861426-23861929,23862013-23862219,23862598-238628... 26 9.6
06_03_0454 - 20968052-20969758 26 9.6
04_04_1404 + 33302080-33303341,33303435-33305307 26 9.6
01_01_0078 + 587975-588179,588506-588606,589087-589167,589240-59... 26 9.6
>11_04_0218 +
14983132-14984658,14984762-14984869,14984964-14985125,
14985270-14985275
Length = 600
Score = 28.7 bits (61), Expect = 1.4
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -2
Query: 198 HLSNIFPDCIWIN--SSYDIKFCGQIFFQVDCSARD 97
HL N PD +W+N S D K CG+ F+ + +++D
Sbjct: 409 HLRNKHPDDLWVNLKSFLDTKLCGK--FKTENASQD 442
>06_01_0069 + 579757-580004,580579-580675
Length = 114
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 273 MYGIFSSSVTSLKS*NNYIFITSFLHLSNIFPDCIWINSSYD 148
M G + + + KS N FI SF+ N+ IWI++ +D
Sbjct: 57 MVGSMWAFLRAFKSGNPDAFIASFIRRYNLNSPLIWIHTPFD 98
>06_03_0750 -
24140988-24141037,24141108-24141345,24142158-24142232,
24142345-24142413,24142550-24142581,24143503-24143583,
24143791-24143851,24144135-24144275,24144372-24144563
Length = 312
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +1
Query: 67 VARFYVSAHEVSGTAVDLEE 126
VA F++S EVSGTA+ L+E
Sbjct: 160 VAPFFISKTEVSGTALVLDE 179
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 26.6 bits (56), Expect = 5.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 40 WNGCINMVDVARFYVSAHEVSGTAVDLEEDLPTELDIVGRINPDTVW 180
W G N + VA+ + E TAV+L + +P+ +D V D +W
Sbjct: 353 WGGKSNWIYVAKPSGDSGE-PWTAVELGQPVPSRIDRVPDFQVDNMW 398
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +1
Query: 97 VSGTAVDLEEDLPTELDIVGRINPDTVWEYIGKMKKASNKDIIILRLQAGN 249
+ G D E++ ELD++GRI + +G N I+ ++ G+
Sbjct: 260 LDGGGPDCEKEFENELDLLGRIRHPNIVSLLGFCIHEGNHYIVYELMEKGS 310
>03_05_1085 + 30275567-30276178,30277024-30278680,30278835-30278968
Length = 800
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 168 WINSSYDIKFCGQIFFQVDCS 106
W S+ D K C FF+VDCS
Sbjct: 447 WKMSTVDSKTCIVFFFRVDCS 467
>11_01_0633 -
5075565-5075707,5076777-5076930,5077021-5077182,
5077369-5078271
Length = 453
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 118 LEEDLPTELDIVGRINPDTVWEYI 189
+EE LPT+ D +G + PDTV ++
Sbjct: 8 MEEPLPTDADHIGAL-PDTVLHHV 30
>06_01_1005 -
7810210-7810907,7811005-7811080,7811180-7811368,
7811507-7811728,7811906-7812004,7812112-7812192,
7812384-7812679,7812777-7813116,7813221-7813284,
7813511-7813735,7816958-7817244
Length = 858
Score = 26.2 bits (55), Expect = 7.2
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -2
Query: 99 DLMC*NIESCNIYHVYTSIPDCCDGYS 19
+L C + +C Y++ T++P+ +GY+
Sbjct: 241 ELYCTHTAACIFYYLATTLPESMEGYT 267
>04_04_1457 -
33741048-33741146,33741647-33741760,33741938-33742052,
33742154-33742560,33743342-33743476,33743576-33743970,
33744225-33744916,33745014-33745097,33745195-33745286,
33745374-33745457,33745535-33745714,33746258-33746302,
33746399-33746692,33747199-33747585,33747713-33747899,
33748042-33748118,33748936-33749067,33749315-33749416,
33749744-33749827,33749902-33749992,33750105-33750178,
33750644-33750664,33751433-33751477,33752427-33752561,
33752693-33752752
Length = 1376
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/37 (27%), Positives = 23/37 (62%)
Frame = +1
Query: 139 ELDIVGRINPDTVWEYIGKMKKASNKDIIILRLQAGN 249
E+D++ +N + +Y+G +K S+ II+ ++ G+
Sbjct: 82 EIDLLKNLNHKNIVKYLGSLKTRSHLHIILEYVENGS 118
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 26.2 bits (55), Expect = 7.2
Identities = 18/83 (21%), Positives = 29/83 (34%)
Frame = -1
Query: 286 TKQCDVWHFFLISYQLEVLKXXXXXXXXXXSFQYIPRLYLD*FFLRYQVLWADLLPGRLQ 107
T C + L+ Y++ + +Y L FF ++W D P L
Sbjct: 2066 TSSCSLGRTILVIYEIAKFLKESEFGMPKNTIKYYSILCERRFFELVFLVWRDETPKSLL 2125
Query: 106 CQRPHVLKHRILQHLPCLYIHSR 38
C + +L C Y+ SR
Sbjct: 2126 CILDSATTYNLLSDSICSYLGSR 2148
>10_07_0169 - 13774003-13774551,13774576-13774655,13775790-13775823
Length = 220
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +1
Query: 1 PSSTVDTIPVATVWNGCINMVDVARFYVSAHEVSGTAVDLEEDLPTELDI 150
P D + V T+ +G ++ V +A + +A V AVD E+ LD+
Sbjct: 24 PRVHADEVSVLTIVHG-LDPVTIASVFSAAEHVGEKAVDGEDCFALRLDV 72
>06_03_0721 - 23861426-23861929,23862013-23862219,23862598-23862852,
23862858-23863212,23863533-23863834,23864006-23864281,
23864854-23865167,23865411-23865683,23865831-23866415,
23866806-23867132,23867270-23867337,23868670-23868746
Length = 1180
Score = 25.8 bits (54), Expect = 9.6
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = +1
Query: 31 ATVWNGCINMVDVARFY-VSAHEVSGTAVDLEEDLPTELDIVGRIN 165
AT W C+ V V RF E D++ D+ T + G N
Sbjct: 987 ATRWESCVESVKVIRFQCADIREALLQVSDVDNDVKTSSEAKGLAN 1032
>06_03_0454 - 20968052-20969758
Length = 568
Score = 25.8 bits (54), Expect = 9.6
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 63 YHVYTSIPDCCDG 25
+HVY S+P C DG
Sbjct: 22 HHVYVSLPQCTDG 34
>04_04_1404 + 33302080-33303341,33303435-33305307
Length = 1044
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +1
Query: 70 ARFYVSAHEVSGTAVDLEEDL--PTELDIVGRINPDTVWEYIGKMKKASNK 216
AR + H V+ L+ + L + G + PD +W+ + +M +A +
Sbjct: 860 ARLAAAEHTVADMQRALDSSIGEAEALRLAGEMGPDMLWDSVSRMDRAGRQ 910
>01_01_0078 +
587975-588179,588506-588606,589087-589167,589240-590178,
590388-590542,590837-590902,590963-591023,591659-591853,
591939-592049,592116-592280
Length = 692
Score = 25.8 bits (54), Expect = 9.6
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Frame = +1
Query: 4 SSTVDTIPVATVWNGCINMVDVAR-------FYVSAHEVSGTAVDLEE--DLPTELDIVG 156
SST++ + A G + V+ AR F +S + A+ + + E D +
Sbjct: 493 SSTMELVHTAITTTGAVEEVEAARSLTIVLQFLLSLVFAAPLAIFSQSVTNFTEEFDFMA 552
Query: 157 ---RINPDTVWEYIGKMKKASNKD 219
+ N D VW ++GK + +KD
Sbjct: 553 MNEKFNKDEVWGHLGKKSHSRDKD 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,487,775
Number of Sequences: 37544
Number of extensions: 151470
Number of successful extensions: 345
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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