Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0809
         (352 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical ...    29   0.94 
U64857-16|AAC25866.1|  123|Caenorhabditis elegans Hypothetical p...    27   2.9  
U41557-5|AAA83306.1|  313|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z36753-6|CAA85335.1|  103|Caenorhabditis elegans Hypothetical pr...    26   8.7  
U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF292050-1|AAG41146.1|  103|Caenorhabditis elegans 2I146 protein.      26   8.7  

>AC024090-4|AAK67221.1|  300|Caenorhabditis elegans Hypothetical
           protein C52E2.7 protein.
          Length = 300

 Score = 29.1 bits (62), Expect = 0.94
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2

Query: 186 IFPDCIWINSSYDIKFC 136
           +FP C W+N S+ +K C
Sbjct: 80  VFPQCRWLNESFSVKKC 96


>U64857-16|AAC25866.1|  123|Caenorhabditis elegans Hypothetical
           protein C37C3.10 protein.
          Length = 123

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -2

Query: 222 YIFITSFLHLSNIFPDCIWINSSYDIKFCGQIFFQVDCSARDLM 91
           +I+IT  L + N++P  +  NS  + +    IFFQ++ S+   M
Sbjct: 42  WIYITELLDVINVYPLSLNNNSIVNFQPGTNIFFQLESSSYSSM 85


>U41557-5|AAA83306.1|  313|Caenorhabditis elegans Hypothetical
           protein C50F7.3 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 4   SSTVDTIPVATVWNGCINMVDVARFYVSAHEVSGTAV 114
           SS V +IP  + W G I + D+   Y++ +++ G  V
Sbjct: 45  SSVVVSIPFESPWTGLIKVGDIL-VYLNGYQIGGQGV 80


>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = -2

Query: 255 SSVTSLKS*NNYIFITSFLHLSNIFPDCIWINSSYDIKFCGQIFFQVDCSARDLMC 88
           S+V S+ S N Y+F  S +H S  F    W   S + K     F       RD++C
Sbjct: 237 STVISINSVNYYLFWISIIHFSTSF----WYYFSVETKQWIFDFLPSPMDYRDIIC 288


>Z36753-6|CAA85335.1|  103|Caenorhabditis elegans Hypothetical
           protein T09A5.7 protein.
          Length = 103

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 198 HLSNIFPDCIWINSSYDIKFCGQIFFQ 118
           H+S+IFP+C  +   YD   C   FFQ
Sbjct: 5   HMSSIFPECDHLKQIYD--KCFTEFFQ 29


>U40799-2|AAA81480.1|  712|Caenorhabditis elegans Hypothetical
           protein F42C5.4 protein.
          Length = 712

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 177 DCIWINSSYDIKFCGQIFFQV 115
           +C+  N  Y   FCG+ FF+V
Sbjct: 437 ECLKSNWLYKCSFCGEAFFEV 457


>AF292050-1|AAG41146.1|  103|Caenorhabditis elegans 2I146 protein.
          Length = 103

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 198 HLSNIFPDCIWINSSYDIKFCGQIFFQ 118
           H+S+IFP+C  +   YD   C   FFQ
Sbjct: 5   HMSSIFPECDHLKQIYD--KCFTEFFQ 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,624,309
Number of Sequences: 27780
Number of extensions: 142488
Number of successful extensions: 398
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)