Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0807
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomy...    85   5e-18
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    30   0.21 
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   6.0  

>SPBC1539.06 |||acyl-coenzyme A binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 85.4 bits (202), Expect = 5e-18
 Identities = 43/79 (54%), Positives = 53/79 (67%)
 Frame = +1

Query: 31  SNVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWHKLAGTSKED 210
           ++VK LK  P   +LL LYA FKQATVGD +   +PGLLDLKGK K++AW +L G SKED
Sbjct: 10  ADVKELKETPNSDELLKLYALFKQATVGDNN-TEKPGLLDLKGKFKWNAWEELKGKSKED 68

Query: 211 AQKAYIEIVEGLIASIGLK 267
           A   YI  V+ L    G+K
Sbjct: 69  AASEYISFVDELKTKYGMK 87


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 30.3 bits (65), Expect = 0.21
 Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = -1

Query: 568 YVYTFKT*FRKGRKLFHCCSILCFSXLEVPFINVRT**FYEINMNLCS*KKNISNQNVK* 389
           ++ T+KT F   ++LF    IL F  L  P ++      +E   N  + KKN+    V  
Sbjct: 620 FLLTYKT-FTTPQELFTLLVIL-FHELPPPGLDATAYSSWEKGDNFVT-KKNVCT--VMN 674

Query: 388 RWRQKSLMRDDDAKNRAYLYSTLDN-ENYHVLASLKIKSFIL 266
            W QK    D  A+N  YL S +      HV+ S  I S IL
Sbjct: 675 LWVQKYFFEDLKARNTLYLISEMRTFLRDHVVPSFHIGSVIL 716


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +1

Query: 64   DAQLLNLYAHFKQ--ATVGDADPANRPGLLD-LKGKAKFDAWHKL-AGTSKEDAQKAYIE 231
            DA LLN+Y +F+Q  + V +A    +  L + +K +    +W        KE A+K++ E
Sbjct: 3316 DAMLLNIYHYFEQFLSKVSEAIHTQKQSLENSIKERILLMSWKDTNVYALKESAKKSHAE 3375

Query: 232  IVEGL 246
            + + L
Sbjct: 3376 LFKVL 3380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,228
Number of Sequences: 5004
Number of extensions: 45300
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)