Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0806
         (680 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.06c |||mitochondrial translation regulator |Schizosaccha...    27   2.5  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   3.3  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    25   7.7  

>SPAC8C9.06c |||mitochondrial translation regulator
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 931

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/74 (21%), Positives = 31/74 (41%)
 Frame = +2

Query: 380 DKIKIIVHDYFIDDTIFGNDILMKCQCHLITFSITILSFGSTLSSNHKIGTIYSSNIFTN 559
           D  K+ +      + I   D+  +    L+ +++T +        +HK   +YS NIF +
Sbjct: 338 DAFKLALQSISNANQIPSFDVFSRLMSALVKYNMTEMILPLVKQYDHKFRNLYSPNIFLS 397

Query: 560 EALTNTFFGFILKI 601
                 F G ++ I
Sbjct: 398 IVQALVFCGDMVNI 411


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 4    NRNEEKSISRLIVIAY*HLRLLRCLYDVFLCIFILCF*ENPEI---LHNCYILM 156
            N NEE        +AY    L+RC    F C  +    EN ++   LH C+ L+
Sbjct: 1957 NPNEEPDSLLFYALAYDLKFLIRCNQSQFNCDILQLLKENKQMSSQLHECFQLL 2010


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 249 CRRNWYCYLIMNKHIKQRVF 308
           C   W+ + I+N  +KQR+F
Sbjct: 247 CLFCWFSFFILNHPVKQRIF 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,342
Number of Sequences: 5004
Number of extensions: 50599
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)