Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0806
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049...    30   1.5  
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112...    29   3.4  
08_01_0014 + 102100-102455,102543-102900                               28   7.9  

>07_03_1698 +
           28803971-28804534,28804614-28804696,28804780-28804900,
           28804982-28805155,28805245-28805349,28805439-28805765
          Length = 457

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 475 FNHYSLFRIYSILQS*NWNYLFF*YIHKRG-FNKYFFRLYLKNIVSMVVLIDRLGVI 642
           ++  + +R+Y +L   N  +LFF  ++K+G F +   R+Y   IVS V  +   G++
Sbjct: 185 YSFQTKYRLYLVLDFINGGHLFF-QLYKQGLFREELARIYTAEIVSAVAHLHDNGIM 240


>03_02_0909 -
           12310460-12310759,12310882-12310989,12311099-12311272,
           12311370-12311490,12311569-12311651,12311754-12312420,
           12314073-12314440
          Length = 606

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 475 FNHYSLFRIYSILQS*NWNYLFF*YIHKRGFNKYFFRLYLKNIVSMVVLIDRLGVI 642
           ++  + +R+Y +L   N  +LFF    +  F +   R+Y   IVS V  +   G++
Sbjct: 342 YSFQTKYRLYLVLDFINGGHLFFQLYQQGLFREELARIYTAEIVSAVAHLHANGIM 397


>08_01_0014 + 102100-102455,102543-102900
          Length = 237

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 431 GNDILMKCQCHLITFSITILSFGSTLSSNHKIGTIYSS-NIFTN 559
           G D L +C   LI F + + +FG TL++   IGT     ++FTN
Sbjct: 62  GGDGLRRC-LGLIDFVLRVAAFGPTLAAAISIGTSDERLSVFTN 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,934,605
Number of Sequences: 37544
Number of extensions: 241378
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)