Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0806
         (680 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice ...    30   8.8  
AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice ...    30   8.8  
AF005258-1|AAC51867.1| 1486|Homo sapiens laminin alpha 3b chain ...    30   8.8  
AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain ...    30   8.8  

>AY327116-1|AAQ72571.1| 3277|Homo sapiens laminin alpha 3 splice
           variant b2 protein.
          Length = 3277

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 153 DEC*QFFFLSNKKNIIGCIGLECEYGG 233
           D C   +F   K N  GC G +C+ GG
Sbjct: 664 DTCEDGYFALEKSNYFGCQGCQCDIGG 690


>AY327115-1|AAQ72570.1| 3333|Homo sapiens laminin alpha 3 splice
           variant b1 protein.
          Length = 3333

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 153 DEC*QFFFLSNKKNIIGCIGLECEYGG 233
           D C   +F   K N  GC G +C+ GG
Sbjct: 664 DTCEDGYFALEKSNYFGCQGCQCDIGG 690


>AF005258-1|AAC51867.1| 1486|Homo sapiens laminin alpha 3b chain
           protein.
          Length = 1486

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 153 DEC*QFFFLSNKKNIIGCIGLECEYGG 233
           D C   +F   K N  GC G +C+ GG
Sbjct: 627 DTCEDGYFALEKSNYFGCQGCQCDIGG 653


>AB107369-1|BAD13428.1| 3333|Homo sapiens laminin alpha 3b chain
           protein.
          Length = 3333

 Score = 29.9 bits (64), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 153 DEC*QFFFLSNKKNIIGCIGLECEYGG 233
           D C   +F   K N  GC G +C+ GG
Sbjct: 664 DTCEDGYFALEKSNYFGCQGCQCDIGG 690


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,544,283
Number of Sequences: 237096
Number of extensions: 1512387
Number of successful extensions: 1734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1734
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)