Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0806
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   0.67 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.2  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   8.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.2  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 249 CRRNWYCYLIMNKHIKQR 302
           CRRN+ CY  + +H + +
Sbjct: 11  CRRNFSCYYSLKRHFQDK 28


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 65  CYVVYMM--FSCVSSYYVFKRILKFYITVTF 151
           C  VY    F+C+   +V KR L +Y+  T+
Sbjct: 222 CTQVYSTGNFTCLEVVFVLKRRLGYYLFHTY 252


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 508 ILQS*NWNYLFF*YIHKRGFNKYFFRLYLKNIV 606
           I+ S + NY +    +K  +N Y  +LY KN +
Sbjct: 314 IISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYI 346


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 500 STLSSNHKIGTIYSSNIFTNEALTN 574
           S+ ++ + + TI+ + IFTN A T+
Sbjct: 74  SSATNPNAMKTIFKNTIFTNVASTS 98


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +1

Query: 109  CF*ENPEILHNCYILMNANN 168
            CF  + E L++CY+  + N+
Sbjct: 1057 CFDSDRERLYDCYVCYSPND 1076


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,025
Number of Sequences: 438
Number of extensions: 3479
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)