Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0805
         (487 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   0.99 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.7  
AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic hor...    23   2.3  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   7.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 0.99
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = -1

Query: 316 IRFTFKSLDAFPANSKTSAVRYSKIAAE*TAAVAPTRPW 200
           I+FT +    FP N+ +    +S +  E   A     PW
Sbjct: 90  IKFTTRDCSLFPGNALSCKETFSLLYYEFDVATKEPPPW 128


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 376 FMRLSNSSSPLIASCKCRGVIRFTFKSLDAFPANS 272
           FMR+ N    ++      G ++F    L  FP+NS
Sbjct: 276 FMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNS 310


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -1

Query: 376 FMRLSNSSSPLIASCKCRGVIRFTFKSLDAFPANS 272
           FMR+ N    ++      G ++F    L  FP+NS
Sbjct: 244 FMRIFNLICMMLLIGHWSGCLQFLVPMLQGFPSNS 278


>AJ876408-1|CAI45289.1|   52|Apis mellifera putative diuretic
           hormone-I protein.
          Length = 52

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 64  VSKWAVVKRVKILVKPRRKLSQDQLEQDFSFPLEEFIG 177
           V+   V+++  +L   RRK  QDQ + D +  L E IG
Sbjct: 14  VNSMDVLRQRVLLELARRKALQDQAQIDANRRLLETIG 51


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 406 HTYTNLSLERKAVLVHPFNFKL 471
           H YTNL+  RK  ++   NF +
Sbjct: 463 HLYTNLTALRKRDVLKKGNFTI 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,019
Number of Sequences: 438
Number of extensions: 2793
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)