Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0804
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.18 
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    25   6.9  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   6.9  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   9.1  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    25   9.1  

>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -3

Query: 483 FRGLASFTGISNKFVFTLTAEPCSDNLYAGTNVSLSREKRPFACKRRACSVRPT 322
           F  L S TG S   + +   +  S+   AG++ S+SR+K PF+   RA S + T
Sbjct: 87  FPTLLSKTGPSKPRIVSWVRKTASNTSVAGSD-SVSRDKIPFSASSRASSTKST 139


>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 291 PDTFSAFLFVVLAVHCMHVFYMQMAFFL 374
           PD ++AFL  ++A+    VFY   A+ L
Sbjct: 66  PDDYNAFLGQIIALIIAPVFYSAQAYVL 93


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = +2

Query: 410 SEHGSAVNVKTNLFEMPVKLARPLNRFAKLDSLQKICRFVIRQTGSSNTWA 562
           SEH + +    +  E+ V+L     RF +L   +K+C+ +        TWA
Sbjct: 178 SEHRAILKKNNSTLELEVRL----QRFIELIKSKKLCQAIAFAKAHFGTWA 224


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 155 PLESCAIYCQLYNHGWYGGGITSS 226
           P ++C+I+  ++ +GW  G I  S
Sbjct: 193 PEQTCSIFSLIFTYGWLNGIIWKS 216


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
 Frame = -3

Query: 429 TAEPCSDNLYAGTNVSLSREKRPFACKRRACSVRPTQ------RKETQRMCLESYESRTK 268
           T+ PC+  ++   + SL        CK+   +V P         + T + CLE + S+ K
Sbjct: 253 TSMPCTCPIHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEPTLQGCLERFVSKEK 312

Query: 267 KTLSCWPASNSSA 229
              SC    + +A
Sbjct: 313 VQYSCHSCGSKNA 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,774,938
Number of Sequences: 5004
Number of extensions: 58745
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)