Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0804
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0474 + 29604201-29604527,29604634-29604988,29605071-296054...    31   1.0  
06_03_0907 - 25851673-25852368,25853531-25853585,25853973-258540...    29   4.1  
05_01_0554 + 4856131-4856605,4858051-4858098,4860611-4860792,486...    29   4.1  
01_06_0303 + 28324155-28325045,28326208-28326321                       29   4.1  
04_01_0274 + 3638409-3639332                                           28   7.1  
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186...    27   9.4  

>01_06_0474 +
           29604201-29604527,29604634-29604988,29605071-29605411,
           29606502-29606940,29607558-29607913
          Length = 605

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -3

Query: 513 FCRESSFANLFRGLASFTGISNKFVFT-LTAEPCS-DNLYAGTNVSLSREKRPFACKRRA 340
           FC+ S+      G  + + +S + +   L AEP S  N +  T+  ++  +R  A + R+
Sbjct: 352 FCKASTVHGAVSGGCASSILSLQDIHVGLGAEPPSRPNSFTSTSSCMAPSRRSMAVRSRS 411

Query: 339 CSVRPT 322
           CS RPT
Sbjct: 412 CSGRPT 417


>06_03_0907 -
           25851673-25852368,25853531-25853585,25853973-25854068,
           25854170-25854435
          Length = 370

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 325 WPYTACTSFTCKWPFF 372
           WP TA  + T +WPFF
Sbjct: 160 WPVTAAAAATTRWPFF 175


>05_01_0554 +
           4856131-4856605,4858051-4858098,4860611-4860792,
           4861409-4863136
          Length = 810

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 123 FCSTQSPSTCIPWNHVLFIVSYIIMAGMGVELRPVKQ 233
           F  T  P+   PW+    + +Y  +A + V LR VKQ
Sbjct: 51  FVQTTRPALSDPWDLAFVVAAYANLAALFVVLRRVKQ 87


>01_06_0303 + 28324155-28325045,28326208-28326321
          Length = 334

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 140 TINMHPLESCAIYCQLYNHGWYGGGITSSEAEELLA-GQHDNVFLVRDSYDSRHI 301
           T+ +  L +C + C L  HG Y   +  S    L A G  D V L+ D  + + +
Sbjct: 190 TVKVWNLTNCKLRCNLEGHGGYVNAVAVSPDGSLCASGGKDGVTLLWDLAEGKRL 244


>04_01_0274 + 3638409-3639332
          Length = 307

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +2

Query: 152 HPLESCAIYCQLYNHGWYGGGITSSEAEELLAGQHDNVFLVRDSYDS 292
           HPL+  A+  +++ HGW        E E LLA  H     VR  + S
Sbjct: 215 HPLDRDAVRSEIFRHGW-KEMCEVVEMELLLAANHPIEHFVRTLHTS 260


>07_03_0521 +
           19016824-19017000,19017064-19017099,19017860-19018624,
           19018772-19018864,19018944-19019114,19019206-19019397,
           19019443-19019530,19019617-19019685,19019841-19020054,
           19020136-19020334,19020406-19020504,19020594-19020850,
           19020927-19021002,19021091-19021204
          Length = 849

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 507 YRKSAGLSSDKQDHQILGLNCLC 575
           YR+S  L+  K+D+   G+NC C
Sbjct: 93  YRQSRVLNRQKKDNTTFGINCRC 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,812,735
Number of Sequences: 37544
Number of extensions: 368548
Number of successful extensions: 931
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)